NKX2-6 ORF clone pFN21AB8942

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB8942

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Clone info.

Species

human

Clone Name

pFN21AB8942 Sequence (with vector) Restriction Map

Product ID

FHC03107

Flexi Clone PID

FXC03107

ORF Sequence

DNA sequence (903 bp)
Protein sequence (301 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464642]

Gene

KIBB8942

Symbol

NKX2-6

Alias : CSX2, CTHM, NKX2F, NKX4-2

Description

NK2 homeobox 6

Original Clone ID

cp00977

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 903 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 301 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4387.1 1.5e-23 45.2 5 CCDS41558.1 5.1e-21 46.7 3 CCDS13145.1 4.4e-15 40.4 2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR020479 154 165 PR00024 Homeobox IPR020479 169 179 PR00024 Homeobox IPR020479 179 188 PR00024 Homeobox HMMPfam IPR001356 133 189 PF00046 Homeobox HMMSmart IPR001356 132 194 SM00389 Homeobox ProfileScan IPR001356 130 190 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001129743 301 217095,611770 100.0 100.0 NP_660328 364 606727 46.7 96.0 NP_002500 273 604612 40.4 89.7 NP_003308 371 118700,188550,600635,610978 36.8 98.7 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB8942 Download

>KIBB8942  903 bp
ATGCTGCTGAGCCCCGTCACCTCCACCCCCTTCTCGGTCAAGGACATCCTGCGACTGGAG
CGCGAGCGGAGCTGCCCCGCGGCTTCGCCACATCCGCGGGTGCGGAAGAGCCCGGAAAAC
TTTCAGTACCTGAGAATGGACGCAGAGCCGCGAGGGTCAGAGGTTCACAACGCTGGTGGC
GGCGGCGGTGACAGAAAGCTGGATGGTTCGGAGCCTCCTGGGGGTCCCTGTGAGGCAGTC
TTGGAGATGGACGCGGAACGGATGGGGGAGCCACAGCCCGGCCTGAACGCGGCCTCGCCC
CTCGGCGGCGGGACCAGGGTGCCAGAGCGCGGCGTTGGCAACAGCGGCGACAGCGTGCGG
GGTGGCCGCTCGGAGCAGCCCAAGGCGCGGCAACGACGGAAGCCGCGCGTGCTCTTTTCG
CAGGCGCAGGTGCTGGCCCTGGAGCGGCGCTTCAAGCAGCAGCGGTACCTGTCAGCGCCC
GAGCGCGAGCACCTGGCCAGCGCGCTGCAGCTCACGTCCACGCAGGTCAAGATCTGGTTC
CAGAACCGACGCTACAAATGCAAGAGACAGCGCCAGGACAAGTCGCTGGAACTGGCTGGC
CACCCTCTAACGCCGCGCCGAGTAGCTGTGCCCGTCCTGGTGCGCGATGGCAAGCCCTGC
CTGGGCCCCGGGCCCGGCGCACCTGCCTTCCCCAGCCCCTACAGTGCAGCAGTGTCGCCC
TACTCTTGCTACGGAGGCTACAGCGGAGCACCCTACGGCGCAGGCTACGGCACCTGCTAC
GCGGGCGCGCCCTCGGGTCCTGCGCCACACACACCACTGGCCAGCGCGGGCTTCGGACAC
GGTGGCCAGAATGCCACCCCGCAGGGCCATCTGGCAGCCACGCTGCAGGGTGTCAGGGCC
TGG

ORF Protein

Cloned ORF protein sequence for pFN21AB8942 Download

>KIBB8942  301 aa
MLLSPVTSTPFSVKDILRLERERSCPAASPHPRVRKSPENFQYLRMDAEPRGSEVHNAGG
GGGDRKLDGSEPPGGPCEAVLEMDAERMGEPQPGLNAASPLGGGTRVPERGVGNSGDSVR
GGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWF
QNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSP
YSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGGQNATPQGHLAATLQGVRA
W

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB8942 Download

>pFN21AB8942  5608 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGCTGCTGAGCCCCGTCACCTCCACCCCCTTCTC
GGTCAAGGACATCCTGCGACTGGAGCGCGAGCGGAGCTGCCCCGCGGCTTCGCCACATCC
GCGGGTGCGGAAGAGCCCGGAAAACTTTCAGTACCTGAGAATGGACGCAGAGCCGCGAGG
GTCAGAGGTTCACAACGCTGGTGGCGGCGGCGGTGACAGAAAGCTGGATGGTTCGGAGCC
TCCTGGGGGTCCCTGTGAGGCAGTCTTGGAGATGGACGCGGAACGGATGGGGGAGCCACA
GCCCGGCCTGAACGCGGCCTCGCCCCTCGGCGGCGGGACCAGGGTGCCAGAGCGCGGCGT
TGGCAACAGCGGCGACAGCGTGCGGGGTGGCCGCTCGGAGCAGCCCAAGGCGCGGCAACG
ACGGAAGCCGCGCGTGCTCTTTTCGCAGGCGCAGGTGCTGGCCCTGGAGCGGCGCTTCAA
GCAGCAGCGGTACCTGTCAGCGCCCGAGCGCGAGCACCTGGCCAGCGCGCTGCAGCTCAC
GTCCACGCAGGTCAAGATCTGGTTCCAGAACCGACGCTACAAATGCAAGAGACAGCGCCA
GGACAAGTCGCTGGAACTGGCTGGCCACCCTCTAACGCCGCGCCGAGTAGCTGTGCCCGT
CCTGGTGCGCGATGGCAAGCCCTGCCTGGGCCCCGGGCCCGGCGCACCTGCCTTCCCCAG
CCCCTACAGTGCAGCAGTGTCGCCCTACTCTTGCTACGGAGGCTACAGCGGAGCACCCTA
CGGCGCAGGCTACGGCACCTGCTACGCGGGCGCGCCCTCGGGTCCTGCGCCACACACACC
ACTGGCCAGCGCGGGCTTCGGACACGGTGGCCAGAATGCCACCCCGCAGGGCCATCTGGC
AGCCACGCTGCAGGGTGTCAGGGCCTGGGTTTAAACGAATTCGGGCTCGGTACCCGGGGA
TCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGG
AAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCG
CTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAG
TGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATA
AGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGG
GAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTC
TAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTC
ATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCA
GGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACAT
TCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAA
AGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTT
TGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAG
TTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGT
TTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCG
GTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAG
AATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTA
AGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTG
ACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTA
ACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGAC
ACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTT
ACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCA
CTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAG
CGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTA
GTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAG
ATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAAC
CGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAG
GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGC
TGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTC
AGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCC
TCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTT
CGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCG
TTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTAT
CCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAG
CCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGT
GGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGC
CAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTA
GCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAG
ATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGA
TTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATA
CAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTT
CAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGG
TTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCT
GTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGG
TAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACG
ATGCGTCCGGCGTAGAGGATCGAGATCT