SYT9 ORF clone pFN21AB5864

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB5864

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Clone info.

Species

human

Clone Name

pFN21AB5864 Sequence (with vector) Restriction Map

Product ID

FHC03774

Flexi Clone PID

FXC03774

ORF Sequence

DNA sequence (1473 bp)
Protein sequence (491 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527847]

Gene

KIBB5864

Symbol

SYT9

Description

synaptotagmin IX

Original Clone ID

cs00564

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1473 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 491 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS7778.1 1.3e-183 100.0 SYT9 CCDS8732.1 3e-97 59.2 SYT10 CCDS871.1 2.4e-94 62.2 SYT6 CCDS12798.1 3.9e-67 48.3 SYT3 CCDS76582.1 1.5e-47 51.7 SYT1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001565 224 239 PR00399 Synaptotagmin IPR001565 239 252 PR00399 Synaptotagmin IPR020477 252 264 PR00360 C2 region IPR020477 279 292 PR00360 C2 region IPR001565 294 309 PR00399 Synaptotagmin IPR020477 303 311 PR00360 C2 region IPR001565 314 324 PR00399 Synaptotagmin HMMPfam IPR000008 237 322 PF00168 C2 calcium-dependent membrane targeting IPR000008 369 456 PF00168 C2 calcium-dependent membrane targeting HMMSmart IPR000008 236 339 SM00239 C2 calcium-dependent membrane targeting IPR000008 368 482 SM00239 C2 calcium-dependent membrane targeting ProfileScan IPR018029 236 323 PS50004 C2 membrane targeting protein IPR018029 366 457 PS50004 C2 membrane targeting protein
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 54 LLTLVVTACGLALFGVSLFVSWK 76 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_783860 491 613528 100.0 100.0 XP_011518206 492 613528 100.0 99.6 XP_011518203 564 613528 100.0 99.6 XP_011518202 567 613528 100.0 99.6 XP_011518204 535 613528 100.0 89.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB5864 Download

>KIBB5864  1473 bp
ATGCCCGGGGCCAGGGACGCGCTCTGTCACCAGGCGCTGCAGCTGCTGGCCGAGCTCTGT
GCCCGTGGGGCCCTGGAGCACGACAGCTGCCAGGATTTCATTTACCACCTGCGGGACCGT
GCCAGACCCCGGCTCCGCGACCCAGATATCTCAGTGAGCCTGCTGACCCTTGTGGTCACT
GCCTGTGGTCTCGCTCTCTTTGGCGTGTCTCTCTTCGTATCTTGGAAACTCTGCTGGGTT
CCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAAAGACAACAACCAGGAGCCCCTTAAC
TACATGGACACAGAGACCAATGAGCAGGAGAACAGTGAGGACTTCCTAGACCCTCCCACG
CCCTGCCCTGACTCCTCCATGAAGATCAGCCACACCTCCCCTGACATTCCCCTCTCCACC
CAGACGGGGATCCAGGAGAACTGTGCCCATGGCGTCCGCGTGCAGCGCCAAGTCACAGAG
CCAACCTCGTCGGCCCGGCATAATTCAATCCGAAGACAACTCAACTTGTCAAACCCGGAC
TTCAATATCCAGCAGCTTCAAAAACAGGAACAGTTGACTGGAATTGGTAGAATTAAACCA
GAGTTATATAAGCAGAGGTCATTGGATAATGATGACGGGAGACGGAGTAACAGCAAGGCT
TGTGGGAAACTGAACTTCATTTTAAAATATGACTGTGACTTAGAGCAGCTCATAGTGAAG
ATTCACAAAGCTGTCAATTTGCCCGCCAAGGACTTTTCTGGGACTTCAGATCCTTATGTC
AAGATCTATTTGCTTCCTGATCGGAAAACAAAACACCAGACTAAAGTTCACAGAAAGACC
CTGAACCCTGTGTTTGATGAAGTGTTTTTATTTCCGGTTCCCTACAATGACCTTGAAGCA
CGGAAGCTTCACTTCTCTGTGTACGACTTTGACAGGTTCTCTCGTCATGACTTAATCGGC
CAAGTGGTGGTGGATCACTTCCTAGACTTGGCTGATTTCCCCAGGGAGTGCATCCTTTGG
AAGGATATCGAATATGTCACCAATGACAACGTGGATCTGGGAGAGCTGATGTTTTCCCTG
TGCTATCTTCCAACGGCTGGCAGGCTGACCATTACCATTATAAAAGCAAGGAATTTAAAG
GCAATGGACATAACAGGAGCATCAGATCCCTATGTGAAAGTCTCGCTGATGTGTGATGGC
AGACGACTGAAGAAGAGGAAAACATCCACCAAGAGGAACACCTTGAATCCTGTTTACAAC
GAAGCCATAGTCTTTGATGTCCCTCCCGAGAACATTGACCAAATCCACTTGTCCATAGCA
GTCATGGACTATGACCGTGTAGGTCACAATGAGATCATCGGCGTGTGTCAAGTAGGCAAC
GAGGCTGAGAGGCTGGGCAGAGACCACTGGAGTGAAATGTTGTCATATCCTCGGAAGCCC
ATTGCACACTGGCATTCCCTGGTGGAGAAACGA

ORF Protein

Cloned ORF protein sequence for pFN21AB5864 Download

>KIBB5864  491 aa
MPGARDALCHQALQLLAELCARGALEHDSCQDFIYHLRDRARPRLRDPDISVSLLTLVVT
ACGLALFGVSLFVSWKLCWVPWRERGLPSGSKDNNQEPLNYMDTETNEQENSEDFLDPPT
PCPDSSMKISHTSPDIPLSTQTGIQENCAHGVRVQRQVTEPTSSARHNSIRRQLNLSNPD
FNIQQLQKQEQLTGIGRIKPELYKQRSLDNDDGRRSNSKACGKLNFILKYDCDLEQLIVK
IHKAVNLPAKDFSGTSDPYVKIYLLPDRKTKHQTKVHRKTLNPVFDEVFLFPVPYNDLEA
RKLHFSVYDFDRFSRHDLIGQVVVDHFLDLADFPRECILWKDIEYVTNDNVDLGELMFSL
CYLPTAGRLTITIIKARNLKAMDITGASDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYN
EAIVFDVPPENIDQIHLSIAVMDYDRVGHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKP
IAHWHSLVEKR

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB5864 Download

>pFN21AB5864  6178 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGCCCGGGGCCAGGGACGCGCTCTGTCACCAGGC
GCTGCAGCTGCTGGCCGAGCTCTGTGCCCGTGGGGCCCTGGAGCACGACAGCTGCCAGGA
TTTCATTTACCACCTGCGGGACCGTGCCAGACCCCGGCTCCGCGACCCAGATATCTCAGT
GAGCCTGCTGACCCTTGTGGTCACTGCCTGTGGTCTCGCTCTCTTTGGCGTGTCTCTCTT
CGTATCTTGGAAACTCTGCTGGGTTCCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAA
AGACAACAACCAGGAGCCCCTTAACTACATGGACACAGAGACCAATGAGCAGGAGAACAG
TGAGGACTTCCTAGACCCTCCCACGCCCTGCCCTGACTCCTCCATGAAGATCAGCCACAC
CTCCCCTGACATTCCCCTCTCCACCCAGACGGGGATCCAGGAGAACTGTGCCCATGGCGT
CCGCGTGCAGCGCCAAGTCACAGAGCCAACCTCGTCGGCCCGGCATAATTCAATCCGAAG
ACAACTCAACTTGTCAAACCCGGACTTCAATATCCAGCAGCTTCAAAAACAGGAACAGTT
GACTGGAATTGGTAGAATTAAACCAGAGTTATATAAGCAGAGGTCATTGGATAATGATGA
CGGGAGACGGAGTAACAGCAAGGCTTGTGGGAAACTGAACTTCATTTTAAAATATGACTG
TGACTTAGAGCAGCTCATAGTGAAGATTCACAAAGCTGTCAATTTGCCCGCCAAGGACTT
TTCTGGGACTTCAGATCCTTATGTCAAGATCTATTTGCTTCCTGATCGGAAAACAAAACA
CCAGACTAAAGTTCACAGAAAGACCCTGAACCCTGTGTTTGATGAAGTGTTTTTATTTCC
GGTTCCCTACAATGACCTTGAAGCACGGAAGCTTCACTTCTCTGTGTACGACTTTGACAG
GTTCTCTCGTCATGACTTAATCGGCCAAGTGGTGGTGGATCACTTCCTAGACTTGGCTGA
TTTCCCCAGGGAGTGCATCCTTTGGAAGGATATCGAATATGTCACCAATGACAACGTGGA
TCTGGGAGAGCTGATGTTTTCCCTGTGCTATCTTCCAACGGCTGGCAGGCTGACCATTAC
CATTATAAAAGCAAGGAATTTAAAGGCAATGGACATAACAGGAGCATCAGATCCCTATGT
GAAAGTCTCGCTGATGTGTGATGGCAGACGACTGAAGAAGAGGAAAACATCCACCAAGAG
GAACACCTTGAATCCTGTTTACAACGAAGCCATAGTCTTTGATGTCCCTCCCGAGAACAT
TGACCAAATCCACTTGTCCATAGCAGTCATGGACTATGACCGTGTAGGTCACAATGAGAT
CATCGGCGTGTGTCAAGTAGGCAACGAGGCTGAGAGGCTGGGCAGAGACCACTGGAGTGA
AATGTTGTCATATCCTCGGAAGCCCATTGCACACTGGCATTCCCTGGTGGAGAAACGAGT
TTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAG
CTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGC
AATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGAT
GAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGT
GATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAAT
TGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAA
AACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCC
CTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTG
GCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGA
ACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAA
CCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGT
GTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACG
CTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTG
GATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATG
AGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAG
CAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACA
GAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATG
AGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACC
GCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTG
AATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACG
TTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGAC
TGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGG
TTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTG
GGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACT
ATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA
TTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATAC
GGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAA
AGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTG
ACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAA
GATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGC
TTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCAC
GCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAAC
CCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGG
TAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGT
ATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGA
CAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCT
CTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGA
TTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACG
CTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCT
TCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTG
GGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTG
TACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGT
TTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTT
TTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCC
ATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT