SRPX ORF clone pFN21AB5557

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB5557

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Clone info.

Species

human

Clone Name

pFN21AB5557 Sequence (with vector) Restriction Map

Product ID

FHC03567

Flexi Clone PID

FXC03567

ORF Sequence

DNA sequence (1392 bp)
Protein sequence (464 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527644]

Gene

KIBB5557

Symbol

SRPX

Alias : DRS, ETX1, HEL-S-83p, SRPX1

Description

sushi-repeat containing protein, X-linked, transcript variant 1

Original Clone ID

ef04470

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1392 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 464 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS14245.1 3.1e-174 100.0 SRPX CCDS55400.1 2.3e-154 95.7 SRPX CCDS55402.1 9.7e-138 100.0 SRPX CCDS55401.1 1.7e-108 87.1 SRPX CCDS14471.1 2.1e-80 45.9 SRPX2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000436 69 112 PF00084 Sushi/SCR/CCP IPR000436 135 174 PF00084 Sushi/SCR/CCP IPR003410 175 257 PF02494 Hyalin IPR000436 262 317 PF00084 Sushi/SCR/CCP HMMSmart IPR000436 57 115 SM00032 Sushi/SCR/CCP IPR000436 120 174 SM00032 Sushi/SCR/CCP IPR000436 262 317 SM00032 Sushi/SCR/CCP ProfileScan IPR000436 67 117 PS50923 Sushi/SCR/CCP IPR000436 118 176 PS50923 Sushi/SCR/CCP IPR003410 175 259 PS50825 Hyalin IPR000436 260 319 PS50923 Sushi/SCR/CCP
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 6 HRPALLLLLPPLLLLLLLRVPPS 28 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006298 464 300187 100.0 100.0 NP_001164221 444 300187 95.7 100.0 XP_016885382 419 300187 97.1 89.9 NP_001164222 405 300187 87.1 100.0 NP_055282 465 300642,300643 45.9 96.1 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB5557 Download

>KIBB5557  1392 bp
ATGGGGAGCCCCGCACATCGGCCCGCGCTGCTGCTGCTGCTGCCGCCTCTGCTGCTGCTG
CTGCTGCTGCGCGTCCCGCCCAGCCGCAGCTTCCCAGGATCGGGAGACTCACCACTAGAA
GACGATGAAGTCGGGTATTCACACCCTAGATATAAAGATACCCCGTGGTGCTCCCCCATC
AAGGTGAAGTATGGGGATGTGTACTGCAGGGCCCCTCAAGGAGGATACTACAAAACAGCC
CTGGGAACCAGGTGCGACATTCGCTGCCAGAAGGGCTACGAGCTGCATGGCTCTTCCCTA
CTGATCTGCCAGTCAAACAAACGATGGTCTGACAAGGTCATCTGCAAACAAAAGCGATGT
CCTACCCTTGCCATGCCAGCAAATGGAGGGTTTAAGTGTGTAGATGGTGCCTACTTTAAC
TCCCGGTGTGAGTATTATTGTTCACCAGGATACACGTTGAAAGGGGAGCGGACCGTCACA
TGTATGGACAACAAGGCCTGGAGCGGCCGGCCAGCCTCCTGTGTGGATATGGAACCTCCT
AGAATCAAGTGCCCAAGTGTGAAGGAACGCATTGCAGAACCCAACAAACTGACAGTCCGG
GTGTCCTGGGAGACACCCGAAGGAAGAGACACAGCAGATGGAATTCTTACTGATGTCATT
CTAAAAGGCCTCCCCCCAGGCTCCAACTTTCCAGAAGGAGACCACAAGATCCAGTACACA
GTCTATGACAGAGCTGAGAATAAGGGCACTTGCAAATTTCGAGTTAAAGTAAGAGTCAAA
CGCTGTGGCAAACTCAATGCCCCAGAGAATGGTTACATGAAGTGCTCCAGCGACGGTGAT
AATTATGGAGCCACCTGTGAGTTCTCCTGCATCGGCGGCTATGAGCTCCAGGGTAGCCCT
GCCCGAGTATGTCAATCCAACCTGGCTTGGTCTGGCACGGAGCCCACCTGTGCAGCCATG
AACGTCAATGTGGGTGTCAGAACGGCAGCTGCACTTCTGGATCAGTTTTATGAGAAAAGG
AGACTCCTCATTGTGTCCACACCCACAGCCCGAAACCTCCTTTACCGGCTCCAGCTAGGA
ATGCTGCAGCAAGCACAGTGTGGCCTTGATCTTCGACACATCACCGTGGTGGAGCTGGTG
GGTGTGTTCCCGACTCTCATTGGCAGGATAGGAGCAAAGATTATGCCTCCAGCCCTAGCG
CTGCAGCTCAGGCTGTTGCTGCGAATCCCACTCTACTCCTTCAGTATGGTGCTAGTGGAT
AAGCATGGCATGGACAAAGAGCGCTATGTCTCCCTGGTGATGCCTGTGGCCCTGTTCAAC
CTGATTGACACTTTTCCCTTGAGAAAAGAAGAGATGGTCCTACAAGCCGAAATGAGCCAG
ACCTGTAACACC

ORF Protein

Cloned ORF protein sequence for pFN21AB5557 Download

>KIBB5557  464 aa
MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB5557 Download

>pFN21AB5557  6097 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGGGAGCCCCGCACATCGGCCCGCGCTGCTGCT
GCTGCTGCCGCCTCTGCTGCTGCTGCTGCTGCTGCGCGTCCCGCCCAGCCGCAGCTTCCC
AGGATCGGGAGACTCACCACTAGAAGACGATGAAGTCGGGTATTCACACCCTAGATATAA
AGATACCCCGTGGTGCTCCCCCATCAAGGTGAAGTATGGGGATGTGTACTGCAGGGCCCC
TCAAGGAGGATACTACAAAACAGCCCTGGGAACCAGGTGCGACATTCGCTGCCAGAAGGG
CTACGAGCTGCATGGCTCTTCCCTACTGATCTGCCAGTCAAACAAACGATGGTCTGACAA
GGTCATCTGCAAACAAAAGCGATGTCCTACCCTTGCCATGCCAGCAAATGGAGGGTTTAA
GTGTGTAGATGGTGCCTACTTTAACTCCCGGTGTGAGTATTATTGTTCACCAGGATACAC
GTTGAAAGGGGAGCGGACCGTCACATGTATGGACAACAAGGCCTGGAGCGGCCGGCCAGC
CTCCTGTGTGGATATGGAACCTCCTAGAATCAAGTGCCCAAGTGTGAAGGAACGCATTGC
AGAACCCAACAAACTGACAGTCCGGGTGTCCTGGGAGACACCCGAAGGAAGAGACACAGC
AGATGGAATTCTTACTGATGTCATTCTAAAAGGCCTCCCCCCAGGCTCCAACTTTCCAGA
AGGAGACCACAAGATCCAGTACACAGTCTATGACAGAGCTGAGAATAAGGGCACTTGCAA
ATTTCGAGTTAAAGTAAGAGTCAAACGCTGTGGCAAACTCAATGCCCCAGAGAATGGTTA
CATGAAGTGCTCCAGCGACGGTGATAATTATGGAGCCACCTGTGAGTTCTCCTGCATCGG
CGGCTATGAGCTCCAGGGTAGCCCTGCCCGAGTATGTCAATCCAACCTGGCTTGGTCTGG
CACGGAGCCCACCTGTGCAGCCATGAACGTCAATGTGGGTGTCAGAACGGCAGCTGCACT
TCTGGATCAGTTTTATGAGAAAAGGAGACTCCTCATTGTGTCCACACCCACAGCCCGAAA
CCTCCTTTACCGGCTCCAGCTAGGAATGCTGCAGCAAGCACAGTGTGGCCTTGATCTTCG
ACACATCACCGTGGTGGAGCTGGTGGGTGTGTTCCCGACTCTCATTGGCAGGATAGGAGC
AAAGATTATGCCTCCAGCCCTAGCGCTGCAGCTCAGGCTGTTGCTGCGAATCCCACTCTA
CTCCTTCAGTATGGTGCTAGTGGATAAGCATGGCATGGACAAAGAGCGCTATGTCTCCCT
GGTGATGCCTGTGGCCCTGTTCAACCTGATTGACACTTTTCCCTTGAGAAAAGAAGAGAT
GGTCCTACAAGCCGAAATGAGCCAGACCTGTAACACCGTTTAAACGAATTCGGGCTCGGT
ACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAG
CCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTG
GGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACT
AGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTA
ACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAG
GTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAA
ATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAG
CTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCT
TAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTC
TAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAA
TATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTT
GCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCT
GAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATC
CTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTA
TGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACAC
TATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGC
ATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAAC
TTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGG
GATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGAC
GAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGC
GAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTT
GCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGA
GCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCC
CGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAG
ATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCG
ACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGG
ATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGG
CCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGAC
GCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTG
GAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCT
TTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGG
TGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCT
GCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCAC
TGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGT
TCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTC
TGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCA
CCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGAT
TTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCAC
GTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGT
CCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAA
TGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTA
TTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCA
TTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAG
GGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACT
CCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT