TDRKH ORF clone pFN21AB5539

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB5539

How to Order Order Information

Clone info.

Species

human

Clone Name

pFN21AB5539 Sequence (with vector) Restriction Map

Product ID

FHC03566

Flexi Clone PID

FXC03566

ORF Sequence

DNA sequence (1683 bp)
Protein sequence (561 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527643]

Gene

KIBB5539

Symbol

TDRKH

Alias : TDRD2

Description

tudor and KH domain containing, transcript variant 3

Original Clone ID

ef03729

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1683 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 561 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS41394.1 1.5e-204 100.0 TDRKH CCDS41395.1 1.3e-149 92.0 TDRKH CCDS7588.1 7.8e-11 31.2 TDRD1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR018111 55 115 PF00013 K Homology IPR018111 127 190 PF00013 K Homology IPR008191 304 422 PF00567 Maternal tudor protein HMMSmart IPR004087 51 120 SM00322 K Homology IPR004087 123 195 SM00322 K Homology IPR002999 352 410 SM00333 Tudor domain ProfileScan IPR004088 52 115 PS50084 K Homology IPR004088 124 190 PS50084 K Homology IPR018351 353 412 PS50304 Tudor subgroup
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016855612 561 609501 100.0 100.0 XP_016855616 561 609501 100.0 100.0 NP_006853 561 609501 100.0 100.0 XP_016855613 561 609501 100.0 100.0 XP_016855614 561 609501 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB5539 Download

>KIBB5539  1683 bp
ATGTCTACTGAACGGACTTCTTGGACAAGCCTGTCCACCATTCAGAAAATAGCCCTGGGC
CTTGGGATCCCAGCCAGTGCAACAGTTGCCTATATCCTATACCGCAGGTATAGGGAAAGC
AGAGAAGAGCGGCTGACATTTGTTGGGGAAGATGACATTGAGATAGAGATGCGGGTTCCC
CAGGAGGCTGTGAAACTCATCATTGGCCGGCAAGGAGCCAATATTAAACAGCTGCGGAAA
CAGACAGGTGCTCGGATTGATGTGGACACAGAGGATGTAGGCGATGAGCGAGTGCTGCTT
ATCAGTGGTTTTCCTGTTCAGGTGTGCAAGGCCAAAGCAGCAATCCATCAGATCCTGACA
GAGAATACCCCAGTGTCTGAGCAGCTTTCAGTTCCCCAGAGATCTGTGGGCAGAATCATA
GGGAGAGGCGGCGAGACAATTCGTTCTATCTGTAAGGCATCTGGAGCCAAAATTACCTGT
GACAAAGAATCAGAAGGGACATTACTACTATCAAGACTTATAAAAATCTCAGGAACACAG
AAGGAAGTGGCAGCAGCCAAGCATTTGATACTGGAGAAAGTTTCAGAAGATGAAGAACTT
CGGAAGAGAATTGCTCATTCTGCAGAAACCAGGGTCCCACGCAAACAGCCAATCAGTGTG
AGAAGAGAAGACATGACAGAGCCAGGTGGAGCTGGAGAGCCAGCATTATGGAAAAACACC
AGTTCTAGCATGGAGCCGACTGCACCCCTGGTGACTCCTCCACCCAAAGGAGGAGGCGAC
ATGGCTGTGGTAGTGTCAAAGGAAGGTTCCTGGGAGAAACCTAGTGATGACAGCTTTCAG
AAGTCTGAAGCCCAGGCCATCCCAGAGATGCCCATGTTTGAAATCCCCAGTCCTGACTTC
AGTTTTCATGCTGATGAGTACCTAGAAGTCTACGTTTCTGCTTCTGAGCACCCTAACCAC
TTCTGGATCCAGATCGTTGGCTCCCGCAGCCTGCAATTGGATAAGCTTGTCAATGAGATG
ACCCAGCACTATGAGAATAGTGTGCCTGAAGACTTGACTGTGCATGTAGGAGACATTGTA
GCAGCACCTTTACCTACAAATGGTTCCTGGTATCGAGCCCGGGTCCTCGGCACCTTGGAG
AATGGGAACTTGGACCTCTATTTTGTTGACTTTGGAGATAATGGAGATTGCCCACTGAAG
GACCTCAGGGCTCTCAGGAGTGACTTCCTAAGCCTTCCATTTCAAGCAATAGAATGTAGT
CTGGCACGGATTGCTCCCTCAGGTGACCAGTGGGAAGAGGAAGCTTTGGATGAGTTTGAT
AGACTCACTCATTGTGCTGACTGGAAGCCTCTGGTAGCCAAGATCTCTAGCTATGTCCAG
ACTGGGATCTCAACTTGGCCAAAGATCTACTTATATGATACTAGCAATGGGAAGAAACTT
GATATTGGGCTAGAATTAGTACACAAAGGATACGCAATTGAGCTTCCTGAAGACATAGAA
GAAAACAGAGCTGTCCCAGACATGTTGAAGGACATGGCCACAGAAACAGATGCCTCTCTC
AGCACGTTGCTCACTGAGACCAAAAAGAGCTCTGGAGAGATAACACATACCCTGTCCTGC
CTCAGCTTATCAGAAGCTGCTTCCATGTCTGGTGATGATAACCTTGAAGATGACTACTTA
CTC

ORF Protein

Cloned ORF protein sequence for pFN21AB5539 Download

>KIBB5539  561 aa
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT
ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ
KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
LSLSEAASMSGDDNLEDDYLL

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB5539 Download

>pFN21AB5539  6388 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTCTACTGAACGGACTTCTTGGACAAGCCTGTC
CACCATTCAGAAAATAGCCCTGGGCCTTGGGATCCCAGCCAGTGCAACAGTTGCCTATAT
CCTATACCGCAGGTATAGGGAAAGCAGAGAAGAGCGGCTGACATTTGTTGGGGAAGATGA
CATTGAGATAGAGATGCGGGTTCCCCAGGAGGCTGTGAAACTCATCATTGGCCGGCAAGG
AGCCAATATTAAACAGCTGCGGAAACAGACAGGTGCTCGGATTGATGTGGACACAGAGGA
TGTAGGCGATGAGCGAGTGCTGCTTATCAGTGGTTTTCCTGTTCAGGTGTGCAAGGCCAA
AGCAGCAATCCATCAGATCCTGACAGAGAATACCCCAGTGTCTGAGCAGCTTTCAGTTCC
CCAGAGATCTGTGGGCAGAATCATAGGGAGAGGCGGCGAGACAATTCGTTCTATCTGTAA
GGCATCTGGAGCCAAAATTACCTGTGACAAAGAATCAGAAGGGACATTACTACTATCAAG
ACTTATAAAAATCTCAGGAACACAGAAGGAAGTGGCAGCAGCCAAGCATTTGATACTGGA
GAAAGTTTCAGAAGATGAAGAACTTCGGAAGAGAATTGCTCATTCTGCAGAAACCAGGGT
CCCACGCAAACAGCCAATCAGTGTGAGAAGAGAAGACATGACAGAGCCAGGTGGAGCTGG
AGAGCCAGCATTATGGAAAAACACCAGTTCTAGCATGGAGCCGACTGCACCCCTGGTGAC
TCCTCCACCCAAAGGAGGAGGCGACATGGCTGTGGTAGTGTCAAAGGAAGGTTCCTGGGA
GAAACCTAGTGATGACAGCTTTCAGAAGTCTGAAGCCCAGGCCATCCCAGAGATGCCCAT
GTTTGAAATCCCCAGTCCTGACTTCAGTTTTCATGCTGATGAGTACCTAGAAGTCTACGT
TTCTGCTTCTGAGCACCCTAACCACTTCTGGATCCAGATCGTTGGCTCCCGCAGCCTGCA
ATTGGATAAGCTTGTCAATGAGATGACCCAGCACTATGAGAATAGTGTGCCTGAAGACTT
GACTGTGCATGTAGGAGACATTGTAGCAGCACCTTTACCTACAAATGGTTCCTGGTATCG
AGCCCGGGTCCTCGGCACCTTGGAGAATGGGAACTTGGACCTCTATTTTGTTGACTTTGG
AGATAATGGAGATTGCCCACTGAAGGACCTCAGGGCTCTCAGGAGTGACTTCCTAAGCCT
TCCATTTCAAGCAATAGAATGTAGTCTGGCACGGATTGCTCCCTCAGGTGACCAGTGGGA
AGAGGAAGCTTTGGATGAGTTTGATAGACTCACTCATTGTGCTGACTGGAAGCCTCTGGT
AGCCAAGATCTCTAGCTATGTCCAGACTGGGATCTCAACTTGGCCAAAGATCTACTTATA
TGATACTAGCAATGGGAAGAAACTTGATATTGGGCTAGAATTAGTACACAAAGGATACGC
AATTGAGCTTCCTGAAGACATAGAAGAAAACAGAGCTGTCCCAGACATGTTGAAGGACAT
GGCCACAGAAACAGATGCCTCTCTCAGCACGTTGCTCACTGAGACCAAAAAGAGCTCTGG
AGAGATAACACATACCCTGTCCTGCCTCAGCTTATCAGAAGCTGCTTCCATGTCTGGTGA
TGATAACCTTGAAGATGACTACTTACTCGTTTAAACGAATTCGGGCTCGGTACCCGGGGA
TCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGG
AAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCG
CTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAG
TGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATA
AGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGG
GAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTC
TAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTC
ATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCA
GGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACAT
TCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAA
AGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTT
TGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAG
TTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGT
TTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCG
GTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAG
AATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTA
AGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTG
ACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTA
ACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGAC
ACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTT
ACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCA
CTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAG
CGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTA
GTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAG
ATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAAC
CGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAG
GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGC
TGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTC
AGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCC
TCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTT
CGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCG
TTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTAT
CCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAG
CCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGT
GGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGC
CAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTA
GCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAG
ATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGA
TTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATA
CAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTT
CAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGG
TTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCT
GTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGG
TAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACG
ATGCGTCCGGCGTAGAGGATCGAGATCT