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SpecieshumanProduct IDFXC07470Cloning SiteSgfI-PmeIGeneKIBB8418SymbolZNF43
Alias : HTF6, KOX27, ZNF39L1Descriptionzinc finger protein 43, transcript variant 4Original Clone IDoc00171
Length: 2427 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 809 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS12413.2 1.4e-175 99.9 ZNF43 CCDS74321.1 1.4e-175 99.9 ZNF43 CCDS59367.1 3.2e-174 99.9 ZNF43 CCDS75605.1 3.5e-116 68.6 ZNF107 CCDS42541.1 2.8e-115 68.0 ZNF91
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001909 4 44 PF01352 Krueppel-associated box IPR007087 314 336 PF00096 Zinc finger IPR007087 342 364 PF00096 Zinc finger IPR007087 370 392 PF00096 Zinc finger IPR007087 426 448 PF00096 Zinc finger IPR007087 454 476 PF00096 Zinc finger IPR007087 482 504 PF00096 Zinc finger IPR007087 566 588 PF00096 Zinc finger IPR007087 594 616 PF00096 Zinc finger IPR007087 650 672 PF00096 Zinc finger IPR007087 706 728 PF00096 Zinc finger IPR007087 734 756 PF00096 Zinc finger IPR007087 762 784 PF00096 Zinc finger HMMSmart IPR001909 4 64 SM00349 Krueppel-associated box IPR015880 174 196 SM00355 Zinc finger IPR015880 202 222 SM00355 Zinc finger IPR015880 230 250 SM00355 Zinc finger IPR015880 258 278 SM00355 Zinc finger IPR015880 286 308 SM00355 Zinc finger IPR015880 314 336 SM00355 Zinc finger IPR015880 342 364 SM00355 Zinc finger IPR015880 370 392 SM00355 Zinc finger IPR015880 398 420 SM00355 Zinc finger IPR015880 426 448 SM00355 Zinc finger IPR015880 454 476 SM00355 Zinc finger IPR015880 482 504 SM00355 Zinc finger IPR015880 510 532 SM00355 Zinc finger IPR015880 538 560 SM00355 Zinc finger IPR015880 566 588 SM00355 Zinc finger IPR015880 594 616 SM00355 Zinc finger IPR015880 622 644 SM00355 Zinc finger IPR015880 650 672 SM00355 Zinc finger IPR015880 678 700 SM00355 Zinc finger IPR015880 706 728 SM00355 Zinc finger IPR015880 734 756 SM00355 Zinc finger IPR015880 762 784 SM00355 Zinc finger ProfileScan IPR001909 4 75 PS50805 Krueppel-associated box IPR007087 174 197 PS50157 Zinc finger IPR007087 202 229 PS50157 Zinc finger IPR007087 230 257 PS50157 Zinc finger IPR007087 258 285 PS50157 Zinc finger IPR007087 286 313 PS50157 Zinc finger IPR007087 314 341 PS50157 Zinc finger IPR007087 342 369 PS50157 Zinc finger IPR007087 370 397 PS50157 Zinc finger IPR007087 398 425 PS50157 Zinc finger IPR007087 426 453 PS50157 Zinc finger IPR007087 454 481 PS50157 Zinc finger IPR007087 482 509 PS50157 Zinc finger IPR007087 510 537 PS50157 Zinc finger IPR007087 538 565 PS50157 Zinc finger IPR007087 566 593 PS50157 Zinc finger IPR007087 594 621 PS50157 Zinc finger IPR007087 622 649 PS50157 Zinc finger IPR007087 650 677 PS50157 Zinc finger IPR007087 678 705 PS50157 Zinc finger IPR007087 706 733 PS50157 Zinc finger IPR007087 734 761 PS50157 Zinc finger IPR007087 762 789 PS50157 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003414 809 603972 99.9 100.0 NP_001243582 818 603972 99.9 100.0 NP_001243577 803 603972 99.9 99.3 XP_016882698 803 603972 99.9 99.3 XP_016882700 803 603972 99.9 99.3 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB8418 Download>KIBB8418 2427 bp ATGGGACCATTGACATTTATGGATGTGGCCATAGAATTCTGTCTGGAGGAGTGGCAATGC CTGGACATCGCACAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTG GTCTTCCTGGGTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGAAAAA GAGCCTTGGGAGCCTATGAGGAGACATGAAATGGTAGCCAAACCCCCAGTTATGTGTTCT CATTTTACCCAAGACTTTTGGCCAGAGCAGCATATAAAAGATCCTTTCCAAAAAGCGACA CTGAGAAGATATAAAAACTGTGAACATAAAAATGTACATTTAAAAAAAGACCATAAAAGT GTGGATGAGTGTAAGGTGCACAGAGGAGGTTATAATGGATTTAACCAATGTTTGCCAGCT ACCCAGAGCAAAATATTTCTATTTGATAAATGTGTGAAAGCCTTTCATAAATTTTCAAAT TCAAACAGACATAAGATAAGCCATACTGAAAAAAAACTTTTCAAATGCAAAGAATGTGGC AAATCATTTTGCATGCTTCCACATCTAGCTCAACATAAAATAATTCATACCAGAGTGAAT TTCTGCAAATGTGAAAAATGTGGAAAAGCTTTTAACTGCCCTTCAATCATCACTAAACAT AAGAGAATTAATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGTCTTTAAT TGGTCCTCACGCCTTACTACACATAAAAAAAATTATACTAGATACAAACTCTACAAATGT GAAGAATGTGGCAAAGCTTTTAACAAGTCCTCAATCCTTACTACCCATAAGATAATTCGC ACTGGAGAGAAATTCTACAAATGTAAAGAATGTGCCAAAGCTTTTAACCAATCCTCAAAC CTTACTGAACATAAGAAAATTCATCCTGGAGAGAAACCTTACAAATGTGAAGAATGTGGC AAAGCCTTTAACTGGCCCTCAACTCTTACTAAACATAAGAGAATTCATACTGGAGAGAAA CCCTACACATGTGAAGAATGTGGCAAAGCCTTTAACCAGTTCACAAACCTTACTACACAT AAGAGAATCCATACTGCAGAGAAATTCTATAAATGTACAGAATGTGGTGAAGCTTTTAGC CGGTCCTCAAACCTTACTAAACATAAGAAAATTCATACTGAAAAGAAACCCTACAAATGT GAAGAATGTGGCAAAGCTTTTAAGTGGTCCTCAAAGCTTACTGAACATAAGTTAACTCAT ACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACTGGCCCTCAACC CTTACTAAACATAACAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGTATGTGGC AAAGCCTTTAACCAGTTCTCAAACCTTACTACACATAAGAGAATTCATACTGCAGAAAAA CCGTACAAATGTGAAGAATGTGGCAAAGCTTTTAGCCGGTCCTCAAACCTTACTAAACAT AAGAAAATTCACATTGAAAAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAG TGGTCCTCAAAGCTTACTGAACATAAGATAACTCATACTGGAGAGAAACCCTACAAATGT GAAGAATGTGGCAAAGCTTTTAACCATTTCTCAATCCTTACCAAACATAAGAGGATTCAT ACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTACCCAATCCTCAAAC CTTACTACACATAAGAAAATTCATACTGGAGAGAAATTCTACAAATGTGAAGAATGTGGC AAAGCTTTTACCCAATCTTCAAACCTTACTACACATAAAAAAATTCATACTGGAGGAAAA CCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCAGTTCTCAACTCTTACTAAACAT AAGATAATTCACACTGAGGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAAG TGGTCCTCAACCCTTACTAAACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGT GAAGAATGTGGCAAAGCTTTTAAACTGTCCTCAACCCTTTCTACACATAAGATTATTCAT ACTGGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCTTTTAACCGATCCTCAAAC CTTATTGAACATAAGAAAATTCATACTGGAGAGCAACCCTACAAATGTGAAGAATGTGGC AAAGCATTTAACTATTCCTCACACCTTAATACACATAAGAGAATTCATACTAAAGAGCAA CCCTACAAATGTAAAGAATGTGGCAAAGCTTTCAACCAATATTCAAACCTTACTACACAT AACAAAATTCATACTGGAGAGAAACTCTACAAACCTGAAGATGTGACAGTGATTTTGACA ACACCTCAAACTTTTTCAAACATAAAA
Cloned ORF protein sequence for pF1KB8418 Download>KIBB8418 809 aa MGPLTFMDVAIEFCLEEWQCLDIAQQNLYRNVMLENYRNLVFLGIAVSKPDLITCLEQEK EPWEPMRRHEMVAKPPVMCSHFTQDFWPEQHIKDPFQKATLRRYKNCEHKNVHLKKDHKS VDECKVHRGGYNGFNQCLPATQSKIFLFDKCVKAFHKFSNSNRHKISHTEKKLFKCKECG KSFCMLPHLAQHKIIHTRVNFCKCEKCGKAFNCPSIITKHKRINTGEKPYTCEECGKVFN WSSRLTTHKKNYTRYKLYKCEECGKAFNKSSILTTHKIIRTGEKFYKCKECAKAFNQSSN LTEHKKIHPGEKPYKCEECGKAFNWPSTLTKHKRIHTGEKPYTCEECGKAFNQFTNLTTH KRIHTAEKFYKCTECGEAFSRSSNLTKHKKIHTEKKPYKCEECGKAFKWSSKLTEHKLTH TGEKPYKCEECGKAFNWPSTLTKHNRIHTGEKPYKCEVCGKAFNQFSNLTTHKRIHTAEK PYKCEECGKAFSRSSNLTKHKKIHIEKKPYKCEECGKAFKWSSKLTEHKITHTGEKPYKC EECGKAFNHFSILTKHKRIHTGEKPYKCEECGKAFTQSSNLTTHKKIHTGEKFYKCEECG KAFTQSSNLTTHKKIHTGGKPYKCEECGKAFNQFSTLTKHKIIHTEEKPYKCEECGKAFK WSSTLTKHKIIHTGEKPYKCEECGKAFKLSSTLSTHKIIHTGEKPYKCEKCGKAFNRSSN LIEHKKIHTGEQPYKCEECGKAFNYSSHLNTHKRIHTKEQPYKCKECGKAFNQYSNLTTH NKIHTGEKLYKPEDVTVILTTPQTFSNIK
Nucleotide Sequence (with vector) for pF1KB8418 Download>pF1KB8418 5540 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGGACCATTG ACATTTATGGATGTGGCCATAGAATTCTGTCTGGAGGAGTGGCAATGCCTGGACATCGCA CAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGGGT ATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGAAAAAGAGCCTTGGGAG CCTATGAGGAGACATGAAATGGTAGCCAAACCCCCAGTTATGTGTTCTCATTTTACCCAA GACTTTTGGCCAGAGCAGCATATAAAAGATCCTTTCCAAAAAGCGACACTGAGAAGATAT AAAAACTGTGAACATAAAAATGTACATTTAAAAAAAGACCATAAAAGTGTGGATGAGTGT AAGGTGCACAGAGGAGGTTATAATGGATTTAACCAATGTTTGCCAGCTACCCAGAGCAAA ATATTTCTATTTGATAAATGTGTGAAAGCCTTTCATAAATTTTCAAATTCAAACAGACAT AAGATAAGCCATACTGAAAAAAAACTTTTCAAATGCAAAGAATGTGGCAAATCATTTTGC ATGCTTCCACATCTAGCTCAACATAAAATAATTCATACCAGAGTGAATTTCTGCAAATGT GAAAAATGTGGAAAAGCTTTTAACTGCCCTTCAATCATCACTAAACATAAGAGAATTAAT ACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGTCTTTAATTGGTCCTCACGC CTTACTACACATAAAAAAAATTATACTAGATACAAACTCTACAAATGTGAAGAATGTGGC AAAGCTTTTAACAAGTCCTCAATCCTTACTACCCATAAGATAATTCGCACTGGAGAGAAA TTCTACAAATGTAAAGAATGTGCCAAAGCTTTTAACCAATCCTCAAACCTTACTGAACAT AAGAAAATTCATCCTGGAGAGAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTAAC TGGCCCTCAACTCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGT GAAGAATGTGGCAAAGCCTTTAACCAGTTCACAAACCTTACTACACATAAGAGAATCCAT ACTGCAGAGAAATTCTATAAATGTACAGAATGTGGTGAAGCTTTTAGCCGGTCCTCAAAC CTTACTAAACATAAGAAAATTCATACTGAAAAGAAACCCTACAAATGTGAAGAATGTGGC AAAGCTTTTAAGTGGTCCTCAAAGCTTACTGAACATAAGTTAACTCATACTGGAGAGAAA CCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACTGGCCCTCAACCCTTACTAAACAT AACAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGTATGTGGCAAAGCCTTTAAC CAGTTCTCAAACCTTACTACACATAAGAGAATTCATACTGCAGAAAAACCGTACAAATGT GAAGAATGTGGCAAAGCTTTTAGCCGGTCCTCAAACCTTACTAAACATAAGAAAATTCAC ATTGAAAAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAGTGGTCCTCAAAG CTTACTGAACATAAGATAACTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGC AAAGCTTTTAACCATTTCTCAATCCTTACCAAACATAAGAGGATTCATACTGGAGAGAAA CCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTACCCAATCCTCAAACCTTACTACACAT AAGAAAATTCATACTGGAGAGAAATTCTACAAATGTGAAGAATGTGGCAAAGCTTTTACC CAATCTTCAAACCTTACTACACATAAAAAAATTCATACTGGAGGAAAACCCTACAAATGT GAAGAATGTGGCAAAGCTTTTAACCAGTTCTCAACTCTTACTAAACATAAGATAATTCAC ACTGAGGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAAGTGGTCCTCAACC CTTACTAAACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGC AAAGCTTTTAAACTGTCCTCAACCCTTTCTACACATAAGATTATTCATACTGGAGAGAAA CCCTACAAATGTGAAAAATGTGGCAAAGCTTTTAACCGATCCTCAAACCTTATTGAACAT AAGAAAATTCATACTGGAGAGCAACCCTACAAATGTGAAGAATGTGGCAAAGCATTTAAC TATTCCTCACACCTTAATACACATAAGAGAATTCATACTAAAGAGCAACCCTACAAATGT AAAGAATGTGGCAAAGCTTTCAACCAATATTCAAACCTTACTACACATAACAAAATTCAT ACTGGAGAGAAACTCTACAAACCTGAAGATGTGACAGTGATTTTGACAACACCTCAAACT TTTTCAAACATAAAAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCG ACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGC TGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAG GGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCA GTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTT TTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGG ACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCA GCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGC AAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCT GATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGT TCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGC TGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAG ACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTG GCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGAC TGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCC GAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACC TGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCC GGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTG TTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGAT GCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGC CGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAA GAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGAT TCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGT TCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCT TTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGA CCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTG CTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACC AACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCT AGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGC TCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTT GGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTG CACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCT ATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAG GGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAG TCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGG GCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTG GCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAC CGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGG GATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGT ACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTT TTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTT TAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCA TCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTT CAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGG CGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG CGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAA AACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACG CTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCG GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCA TCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACAT TCAAATATGTATCCGCTCAT
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