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SpecieshumanProduct IDFXC06055Cloning SiteSgfI-PmeIGeneKIBB7880SymbolZNF549Descriptionzinc finger protein 549, transcript variant 1Original Clone IDcs00380
Length: 1920 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 640 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS56106.1 1.3e-129 99.8 ZNF549 CCDS12952.1 1e-125 97.8 ZNF549 CCDS12980.1 2.3e-58 47.8 ZNF132 CCDS74350.1 1.3e-47 44.4 ZNF850 CCDS12498.1 4.4e-47 43.0 ZNF420
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001909 27 67 PF01352 Krueppel-associated box IPR007087 332 355 PF00096 Zinc finger IPR007087 445 467 PF00096 Zinc finger IPR007087 473 495 PF00096 Zinc finger IPR007087 613 635 PF00096 Zinc finger HMMSmart IPR001909 27 80 SM00349 Krueppel-associated box IPR015880 182 204 SM00355 Zinc finger IPR015880 222 241 SM00355 Zinc finger IPR015880 275 298 SM00355 Zinc finger IPR015880 304 326 SM00355 Zinc finger IPR015880 332 355 SM00355 Zinc finger IPR015880 361 383 SM00355 Zinc finger IPR015880 389 411 SM00355 Zinc finger IPR015880 417 439 SM00355 Zinc finger IPR015880 445 467 SM00355 Zinc finger IPR015880 473 495 SM00355 Zinc finger IPR015880 501 523 SM00355 Zinc finger IPR015880 529 551 SM00355 Zinc finger IPR015880 557 579 SM00355 Zinc finger IPR015880 585 607 SM00355 Zinc finger IPR015880 613 635 SM00355 Zinc finger ProfileScan IPR001909 27 140 PS50805 Krueppel-associated box IPR007087 217 246 PS50157 Zinc finger IPR007087 247 274 PS50157 Zinc finger IPR007087 275 303 PS50157 Zinc finger IPR007087 304 331 PS50157 Zinc finger IPR007087 332 360 PS50157 Zinc finger IPR007087 361 388 PS50157 Zinc finger IPR007087 389 416 PS50157 Zinc finger IPR007087 417 444 PS50157 Zinc finger IPR007087 445 472 PS50157 Zinc finger IPR007087 473 500 PS50157 Zinc finger IPR007087 501 528 PS50157 Zinc finger IPR007087 529 556 PS50157 Zinc finger IPR007087 557 584 PS50157 Zinc finger IPR007087 585 612 PS50157 Zinc finger IPR007087 613 640 PS50157 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003424 706 604074 47.8 96.4 NP_001311072 693 314995 43.1 85.6 NP_001311078 693 314995 43.1 85.6 NP_001311081 693 314995 43.1 85.6 NP_001311070 693 314995 43.1 85.6 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB7880 Download>KIBB7880 1920 bp ATGGCCGAGGCAGCGCTAGTGAATACGCCGCAGATTCCCATGGTAACAGAAGAGTTTGTG AAACCATCACAGGGCCATGTGACCTTTGAGGATATTGCTGTGTACTTCTCCCAGGAGGAG TGGGGCCTCCTTGATGAAGCTCAAAGGTGCCTGTATCATGATGTGATGCTGGAGAACTTT TCGCTTATGGCCTCAGTAGGTTGTTTGCATGGAATAGAGGCTGAGGAGGCCCCTTCTGAG CAGACTCTTTCTGCGCAAGGAGTGTCACAGGCCAGGACTCCAAAGCTAGGTCCTTCCATC CCAAATGCTCATTCTTGTGAGATGTGTATCCTGGTCATGAAAGACATTTTGTACCTCAGT GAGCATCAGGGGACACTTCCCTGGCAGAAACCTTATACGTCTGTGGCCAGTGGGAAATGG TTTTCATTTGGTTCTAACCTGCAACAGCACCAGAACCAGGACAGTGGAGAGAAACACATC AGAAAGGAGGAGAGCAGTGCCTTGCTTCTGAATAGCTGCAAAATTCCTCTGTCAGACAAT CTTTTCCCATGCAAAGATGTTGAGAAGGATTTTCCAACCATCCTGGGCCTTCTCCAACAC CAGACCACCCACAGCAGACAAGAGTATGCACATAGAAGCAGGGAGACCTTTCAACAAAGA CGTTACAAATGTGAGCAAGTTTTCAATGAGAAAGTTCATGTTACTGAGCATCAGAGAGTC CACACTGGAGAAAAAGCTTATAAGCGTAGGGAATATGGGAAATCCTTGAACTCTAAATAC TTATTTGTTGAACACCAGAGAACCCATAATGCAGAAAAGCCTTATGTGTGCAATATATGT GGGAAATCATTCCTCCATAAACAAACACTCGTTGGGCACCAGCAGAGAATTCACACTAGA GAAAGGTCTTATGTGTGCATCGAATGTGGGAAATCCTTGAGCTCCAAATACTCACTTGTG GAACACCAGAGAACCCATAATGGAGAAAAGCCTTATGTGTGCAATGTATGTGGGAAATCA TTCCGCCACAAACAAACATTTGTTGGCCATCAGCAGAGAATCCACACTGGAGAGAGGCCT TATGTGTGTATGGAATGTGGGAAATCTTTTATTCATTCCTATGACCGCATTCGACACCAG AGAGTTCACACTGGAGAAGGGGCTTATCAGTGCAGTGAATGTGGGAAATCCTTCATATAC AAACAGTCACTTCTTGATCACCATAGAATCCACACGGGAGAAAGGCCTTATGAGTGCAAA GAATGTGGGAAGGCCTTCATTCACAAAAAAAGACTTCTTGAGCACCAGAGAATTCATACT GGAGAAAAGCCTTATGTGTGCATCATATGTGGGAAATCATTTATCCGCTCGTCTGACTAC ATGCGACACCAGAGAATTCACACTGGAGAAAGGGCTTATGAATGCAGTGACTGTGGGAAA GCCTTCATCTCCAAACAAACACTTCTTAAGCATCACAAAATCCACACTAGAGAAAGGCCT TATGAATGCAGTGAATGTGGAAAAGGCTTCTACCTTGAGGTTAAACTTCTTCAGCACCAA AGAATCCATACTAGAGAACAACTTTGTGAGTGCAATGAATGTGGAAAAGTCTTCAGCCAC CAAAAAAGACTTCTTGAGCACCAGAAAGTTCACACTGGCGAAAAGCCCTGTGAGTGCAGT GAATGTGGGAAATGCTTTAGACACCGCACCAGCCTCATTCAACACCAGAAAGTTCACAGT GGAGAGAGGCCTTATAACTGCACTGCATGTGAGAAGGCCTTTATCTATAAAAACAAACTT GTTGAGCATCAGCGAATCCACACCGGAGAAAAGCCGTATGAATGTGGTAAATGTGGGAAA GCCTTCAACAAAAGATATTCCCTTGTCAGGCACCAGAAGGTACATATAACAGAAGAGCCC
Cloned ORF protein sequence for pF1KB7880 Download>KIBB7880 640 aa MAEAALVNTPQIPMVTEEFVKPSQGHVTFEDIAVYFSQEEWGLLDEAQRCLYHDVMLENF SLMASVGCLHGIEAEEAPSEQTLSAQGVSQARTPKLGPSIPNAHSCEMCILVMKDILYLS EHQGTLPWQKPYTSVASGKWFSFGSNLQQHQNQDSGEKHIRKEESSALLLNSCKIPLSDN LFPCKDVEKDFPTILGLLQHQTTHSRQEYAHRSRETFQQRRYKCEQVFNEKVHVTEHQRV HTGEKAYKRREYGKSLNSKYLFVEHQRTHNAEKPYVCNICGKSFLHKQTLVGHQQRIHTR ERSYVCIECGKSLSSKYSLVEHQRTHNGEKPYVCNVCGKSFRHKQTFVGHQQRIHTGERP YVCMECGKSFIHSYDRIRHQRVHTGEGAYQCSECGKSFIYKQSLLDHHRIHTGERPYECK ECGKAFIHKKRLLEHQRIHTGEKPYVCIICGKSFIRSSDYMRHQRIHTGERAYECSDCGK AFISKQTLLKHHKIHTRERPYECSECGKGFYLEVKLLQHQRIHTREQLCECNECGKVFSH QKRLLEHQKVHTGEKPCECSECGKCFRHRTSLIQHQKVHSGERPYNCTACEKAFIYKNKL VEHQRIHTGEKPYECGKCGKAFNKRYSLVRHQKVHITEEP
Nucleotide Sequence (with vector) for pF1KB7880 Download>pF1KB7880 5033 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCCGAGGCA GCGCTAGTGAATACGCCGCAGATTCCCATGGTAACAGAAGAGTTTGTGAAACCATCACAG GGCCATGTGACCTTTGAGGATATTGCTGTGTACTTCTCCCAGGAGGAGTGGGGCCTCCTT GATGAAGCTCAAAGGTGCCTGTATCATGATGTGATGCTGGAGAACTTTTCGCTTATGGCC TCAGTAGGTTGTTTGCATGGAATAGAGGCTGAGGAGGCCCCTTCTGAGCAGACTCTTTCT GCGCAAGGAGTGTCACAGGCCAGGACTCCAAAGCTAGGTCCTTCCATCCCAAATGCTCAT TCTTGTGAGATGTGTATCCTGGTCATGAAAGACATTTTGTACCTCAGTGAGCATCAGGGG ACACTTCCCTGGCAGAAACCTTATACGTCTGTGGCCAGTGGGAAATGGTTTTCATTTGGT TCTAACCTGCAACAGCACCAGAACCAGGACAGTGGAGAGAAACACATCAGAAAGGAGGAG AGCAGTGCCTTGCTTCTGAATAGCTGCAAAATTCCTCTGTCAGACAATCTTTTCCCATGC AAAGATGTTGAGAAGGATTTTCCAACCATCCTGGGCCTTCTCCAACACCAGACCACCCAC AGCAGACAAGAGTATGCACATAGAAGCAGGGAGACCTTTCAACAAAGACGTTACAAATGT GAGCAAGTTTTCAATGAGAAAGTTCATGTTACTGAGCATCAGAGAGTCCACACTGGAGAA AAAGCTTATAAGCGTAGGGAATATGGGAAATCCTTGAACTCTAAATACTTATTTGTTGAA CACCAGAGAACCCATAATGCAGAAAAGCCTTATGTGTGCAATATATGTGGGAAATCATTC CTCCATAAACAAACACTCGTTGGGCACCAGCAGAGAATTCACACTAGAGAAAGGTCTTAT GTGTGCATCGAATGTGGGAAATCCTTGAGCTCCAAATACTCACTTGTGGAACACCAGAGA ACCCATAATGGAGAAAAGCCTTATGTGTGCAATGTATGTGGGAAATCATTCCGCCACAAA CAAACATTTGTTGGCCATCAGCAGAGAATCCACACTGGAGAGAGGCCTTATGTGTGTATG GAATGTGGGAAATCTTTTATTCATTCCTATGACCGCATTCGACACCAGAGAGTTCACACT GGAGAAGGGGCTTATCAGTGCAGTGAATGTGGGAAATCCTTCATATACAAACAGTCACTT CTTGATCACCATAGAATCCACACGGGAGAAAGGCCTTATGAGTGCAAAGAATGTGGGAAG GCCTTCATTCACAAAAAAAGACTTCTTGAGCACCAGAGAATTCATACTGGAGAAAAGCCT TATGTGTGCATCATATGTGGGAAATCATTTATCCGCTCGTCTGACTACATGCGACACCAG AGAATTCACACTGGAGAAAGGGCTTATGAATGCAGTGACTGTGGGAAAGCCTTCATCTCC AAACAAACACTTCTTAAGCATCACAAAATCCACACTAGAGAAAGGCCTTATGAATGCAGT GAATGTGGAAAAGGCTTCTACCTTGAGGTTAAACTTCTTCAGCACCAAAGAATCCATACT AGAGAACAACTTTGTGAGTGCAATGAATGTGGAAAAGTCTTCAGCCACCAAAAAAGACTT CTTGAGCACCAGAAAGTTCACACTGGCGAAAAGCCCTGTGAGTGCAGTGAATGTGGGAAA TGCTTTAGACACCGCACCAGCCTCATTCAACACCAGAAAGTTCACAGTGGAGAGAGGCCT TATAACTGCACTGCATGTGAGAAGGCCTTTATCTATAAAAACAAACTTGTTGAGCATCAG CGAATCCACACCGGAGAAAAGCCGTATGAATGTGGTAAATGTGGGAAAGCCTTCAACAAA AGATATTCCCTTGTCAGGCACCAGAAGGTACATATAACAGAAGAGCCCGTTTAAACGAAT TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA ACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC AGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTT GCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAG TCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTC CCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCC TTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGT CGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTT ATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGC AGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAA GTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAA GCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGG TAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGA AGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGG GATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAA TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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