SRPX ORF clone pF1KB5557

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Flexi ORF Clone pF1KB5557

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Clone info.

Species

human

Clone Name

pF1KB5557 Sequence (with vector) Restriction Map

Product ID

FXC03567

HaloTag Clone PID

FHC03567

ORF Sequence

DNA sequence (1392 bp)
Protein sequence (464 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527644]

Gene

KIBB5557

Symbol

SRPX

Alias : DRS, ETX1, HEL-S-83p, SRPX1

Description

sushi-repeat containing protein, X-linked, transcript variant 1

Original Clone ID

ef04470

Features of the cloned ORF sequence

Description

Length: 1392 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 464 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS14245.1 3.1e-174 100.0 SRPX CCDS55400.1 2.3e-154 95.7 SRPX CCDS55402.1 9.7e-138 100.0 SRPX CCDS55401.1 1.7e-108 87.1 SRPX CCDS14471.1 2.1e-80 45.9 SRPX2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000436 69 112 PF00084 Sushi/SCR/CCP IPR000436 135 174 PF00084 Sushi/SCR/CCP IPR003410 175 257 PF02494 Hyalin IPR000436 262 317 PF00084 Sushi/SCR/CCP HMMSmart IPR000436 57 115 SM00032 Sushi/SCR/CCP IPR000436 120 174 SM00032 Sushi/SCR/CCP IPR000436 262 317 SM00032 Sushi/SCR/CCP ProfileScan IPR000436 67 117 PS50923 Sushi/SCR/CCP IPR000436 118 176 PS50923 Sushi/SCR/CCP IPR003410 175 259 PS50825 Hyalin IPR000436 260 319 PS50923 Sushi/SCR/CCP
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 6 HRPALLLLLPPLLLLLLLRVPPS 28 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006298 464 300187 100.0 100.0 NP_001164221 444 300187 95.7 100.0 XP_016885382 419 300187 97.1 89.9 NP_001164222 405 300187 87.1 100.0 NP_055282 465 300642,300643 45.9 96.1 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5557 Download

>KIBB5557  1392 bp
ATGGGGAGCCCCGCACATCGGCCCGCGCTGCTGCTGCTGCTGCCGCCTCTGCTGCTGCTG
CTGCTGCTGCGCGTCCCGCCCAGCCGCAGCTTCCCAGGATCGGGAGACTCACCACTAGAA
GACGATGAAGTCGGGTATTCACACCCTAGATATAAAGATACCCCGTGGTGCTCCCCCATC
AAGGTGAAGTATGGGGATGTGTACTGCAGGGCCCCTCAAGGAGGATACTACAAAACAGCC
CTGGGAACCAGGTGCGACATTCGCTGCCAGAAGGGCTACGAGCTGCATGGCTCTTCCCTA
CTGATCTGCCAGTCAAACAAACGATGGTCTGACAAGGTCATCTGCAAACAAAAGCGATGT
CCTACCCTTGCCATGCCAGCAAATGGAGGGTTTAAGTGTGTAGATGGTGCCTACTTTAAC
TCCCGGTGTGAGTATTATTGTTCACCAGGATACACGTTGAAAGGGGAGCGGACCGTCACA
TGTATGGACAACAAGGCCTGGAGCGGCCGGCCAGCCTCCTGTGTGGATATGGAACCTCCT
AGAATCAAGTGCCCAAGTGTGAAGGAACGCATTGCAGAACCCAACAAACTGACAGTCCGG
GTGTCCTGGGAGACACCCGAAGGAAGAGACACAGCAGATGGAATTCTTACTGATGTCATT
CTAAAAGGCCTCCCCCCAGGCTCCAACTTTCCAGAAGGAGACCACAAGATCCAGTACACA
GTCTATGACAGAGCTGAGAATAAGGGCACTTGCAAATTTCGAGTTAAAGTAAGAGTCAAA
CGCTGTGGCAAACTCAATGCCCCAGAGAATGGTTACATGAAGTGCTCCAGCGACGGTGAT
AATTATGGAGCCACCTGTGAGTTCTCCTGCATCGGCGGCTATGAGCTCCAGGGTAGCCCT
GCCCGAGTATGTCAATCCAACCTGGCTTGGTCTGGCACGGAGCCCACCTGTGCAGCCATG
AACGTCAATGTGGGTGTCAGAACGGCAGCTGCACTTCTGGATCAGTTTTATGAGAAAAGG
AGACTCCTCATTGTGTCCACACCCACAGCCCGAAACCTCCTTTACCGGCTCCAGCTAGGA
ATGCTGCAGCAAGCACAGTGTGGCCTTGATCTTCGACACATCACCGTGGTGGAGCTGGTG
GGTGTGTTCCCGACTCTCATTGGCAGGATAGGAGCAAAGATTATGCCTCCAGCCCTAGCG
CTGCAGCTCAGGCTGTTGCTGCGAATCCCACTCTACTCCTTCAGTATGGTGCTAGTGGAT
AAGCATGGCATGGACAAAGAGCGCTATGTCTCCCTGGTGATGCCTGTGGCCCTGTTCAAC
CTGATTGACACTTTTCCCTTGAGAAAAGAAGAGATGGTCCTACAAGCCGAAATGAGCCAG
ACCTGTAACACC

ORF Protein

Cloned ORF protein sequence for pF1KB5557 Download

>KIBB5557  464 aa
MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPI
KVKYGDVYCRAPQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRC
PTLAMPANGGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPP
RIKCPSVKERIAEPNKLTVRVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYT
VYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGYELQGSP
ARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLG
MLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5557 Download

>pF1KB5557  4505 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGGGAGCCCC
GCACATCGGCCCGCGCTGCTGCTGCTGCTGCCGCCTCTGCTGCTGCTGCTGCTGCTGCGC
GTCCCGCCCAGCCGCAGCTTCCCAGGATCGGGAGACTCACCACTAGAAGACGATGAAGTC
GGGTATTCACACCCTAGATATAAAGATACCCCGTGGTGCTCCCCCATCAAGGTGAAGTAT
GGGGATGTGTACTGCAGGGCCCCTCAAGGAGGATACTACAAAACAGCCCTGGGAACCAGG
TGCGACATTCGCTGCCAGAAGGGCTACGAGCTGCATGGCTCTTCCCTACTGATCTGCCAG
TCAAACAAACGATGGTCTGACAAGGTCATCTGCAAACAAAAGCGATGTCCTACCCTTGCC
ATGCCAGCAAATGGAGGGTTTAAGTGTGTAGATGGTGCCTACTTTAACTCCCGGTGTGAG
TATTATTGTTCACCAGGATACACGTTGAAAGGGGAGCGGACCGTCACATGTATGGACAAC
AAGGCCTGGAGCGGCCGGCCAGCCTCCTGTGTGGATATGGAACCTCCTAGAATCAAGTGC
CCAAGTGTGAAGGAACGCATTGCAGAACCCAACAAACTGACAGTCCGGGTGTCCTGGGAG
ACACCCGAAGGAAGAGACACAGCAGATGGAATTCTTACTGATGTCATTCTAAAAGGCCTC
CCCCCAGGCTCCAACTTTCCAGAAGGAGACCACAAGATCCAGTACACAGTCTATGACAGA
GCTGAGAATAAGGGCACTTGCAAATTTCGAGTTAAAGTAAGAGTCAAACGCTGTGGCAAA
CTCAATGCCCCAGAGAATGGTTACATGAAGTGCTCCAGCGACGGTGATAATTATGGAGCC
ACCTGTGAGTTCTCCTGCATCGGCGGCTATGAGCTCCAGGGTAGCCCTGCCCGAGTATGT
CAATCCAACCTGGCTTGGTCTGGCACGGAGCCCACCTGTGCAGCCATGAACGTCAATGTG
GGTGTCAGAACGGCAGCTGCACTTCTGGATCAGTTTTATGAGAAAAGGAGACTCCTCATT
GTGTCCACACCCACAGCCCGAAACCTCCTTTACCGGCTCCAGCTAGGAATGCTGCAGCAA
GCACAGTGTGGCCTTGATCTTCGACACATCACCGTGGTGGAGCTGGTGGGTGTGTTCCCG
ACTCTCATTGGCAGGATAGGAGCAAAGATTATGCCTCCAGCCCTAGCGCTGCAGCTCAGG
CTGTTGCTGCGAATCCCACTCTACTCCTTCAGTATGGTGCTAGTGGATAAGCATGGCATG
GACAAAGAGCGCTATGTCTCCCTGGTGATGCCTGTGGCCCTGTTCAACCTGATTGACACT
TTTCCCTTGAGAAAAGAAGAGATGGTCCTACAAGCCGAAATGAGCCAGACCTGTAACACC
GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA
AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA
GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA
AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA
TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT
AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT
GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA
GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG
GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA
TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG
GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC
GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT
GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT
CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC
GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC
ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC
CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG
GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG
GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT
ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG
GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA
TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC
TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACC
AAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATC
AGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAA
AAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAA
TCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCC
CCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTC
CGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAG
TTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGA
CCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATC
GCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTAC
AGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTG
CGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACA
AACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAA
AGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAA
CTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTT
ATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATG
AAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCAT
AGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGT
TGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAA
TTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCA
GTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGAT
TAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGT
GGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGT
GGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGT
CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA
CAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG
GACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC
TTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG
CTCAT