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SpecieshumanProduct IDFXC01755Cloning SiteSgfI-PmeIGeneKIBB4009SymbolPCDHB11
Alias : ME2, PCDH-BETA11Descriptionprotocadherin beta 11Original Clone IDfj13116
Length: 2391 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 797 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS4253.1 0 99.9 PCDHB11 CCDS4254.1 0 88.7 PCDHB12 CCDS4256.1 0 77.0 PCDHB14 CCDS4245.1 0 75.1 PCDHB3 CCDS4244.1 0 75.3 PCDHB2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 314 326 PR00205 Cadherin IPR002126 326 345 PR00205 Cadherin IPR002126 449 462 PR00205 Cadherin IPR002126 509 535 PR00205 Cadherin IPR002126 543 560 PR00205 Cadherin HMMPfam IPR013164 30 112 PF08266 Cadherin IPR002126 141 232 PF00028 Cadherin IPR002126 247 337 PF00028 Cadherin IPR002126 356 441 PF00028 Cadherin IPR002126 456 552 PF00028 Cadherin IPR002126 580 661 PF00028 Cadherin HMMSmart IPR002126 54 131 SM00112 Cadherin IPR002126 155 240 SM00112 Cadherin IPR002126 264 345 SM00112 Cadherin IPR002126 368 449 SM00112 Cadherin IPR002126 473 559 SM00112 Cadherin IPR002126 589 670 SM00112 Cadherin ProfileScan IPR002126 75 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 347 PS50268 Cadherin IPR002126 348 451 PS50268 Cadherin IPR002126 452 561 PS50268 Cadherin IPR002126 576 671 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 6 TRTQQIRQVLLLFVLLGMSQAG 27 SECONDARY 22 2 689 YLVVALASVSSLFLFSVLLFVAV 711 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061754 797 606337 99.9 100.0 NP_061755 795 606338 88.7 99.7 NP_061757 798 606340 77.0 99.9 NP_061760 796 606329 75.1 99.9 NP_061759 798 606328 75.3 99.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB4009 Download>KIBB4009 2391 bp ATGGAGAACCAAGGGACACGCACTCAGCAGATAAGGCAAGTCCTGCTTCTCTTTGTTTTG CTCGGAATGTCTCAGGCGGGCTCTGAAACCTGGAGCTTTTCTGTGGCAGAAGAAATGCAG AGCGGGAGTTTTGTAGGCAATCTGGCAAAGGACCTGGGGCTGAAGGTGAGAGAACTGTCC TCACGGGGGGCTCGGGTGGTCTCTAATGATAAGAAACAGCGTTTGCAGCTGGACATAAAC ACTGGGGATTTGCTCTTAAGTGAAACACTAGACAGGGAGGAGCTCTGCGGTTCCATCGAG CCTTGCGTGCTACATTTGCAGGTGTTAATGCAAAACCCCACGCAGTTTTTACAAATTGAG CTTCAGGTCAGGGATATAAATGATCACTCTCCCATCTTCTCGGAAAAACAAATGCTCCTA GAAATCCCAGAGAACAGTCCCGTTGGTGCTGTGTTCTTACTAGAAAGTGCGAAGGATTTA GATGTAGGAATCAATGCTGTAAAAAGCTACACAATAAGCCCCAACTCTCATTTTCACATT AAAATGAGAGTCATTCCAGACAATAGGAAATACCCCGAGTTAGTTCTGGACAAGGCGCTG GATTATGAAGAGCTCCCGGAGCTCAGTTTCATCCTCTCTGCTCTGGATGGTGGGTCCCCT CCCAGGTCTGGAACTGCCTTGGTCAGGGTGGTGGTTGTGGACATTAATGACAACTCCCCT GAATTTGAGCAGGCTTTTTATGAGGTGAAGATTCGGGAGAATAGCATCCTTGGCTCGCTG ATTTTGATTGTCTCAGCTTGGGATTTAGACTCTGGAACAAATGGTGAAATATGCTATACC TTTTCCCATGCCTCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGAGAA ATTACTTTAAGAGCACCTCTGGATTTTGAAACGATTGAGTCATACTCAATAATCATTCAA GCCACAGATGGGGGAGGACTTTTTGGAAAATCTACAGTCATAATTCACGTGATAGATGTA AATGACAATGCTCCTGAAATCACTGTGTCATCAATTACCAGTCCAATCCCAGAAAATACG CCAGAGACCGTGGTTATGGTTTTTAGTATCCAAGATATAGACTCTGGGGACAACGGAAGA ATTGTTTGTTCCATTCCGGAAGACCTCCCATTCGTGCTAAAATCTTCAGTTGAGAATTAC CACACGTTGGAAACAGAGAGACCACTGGACAGAGAGAGCACAGCCGAGTACAATATCACC ATCACCGTCACCGACTTGGGGATACCCAGGCTGAAAACCGAGCACAACACAACTGTGTTG GTCTCTGACGTCAATGACAACGCCCCCACCTTCACCCAAACCTCCTACACCCTGTTCGTC CGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGTGTCAGCGCTACAGACAGAGACTCA GGCACCAACGCCCAGGTCAACTACTCGCTACTCCCGCCCCAGGACCTGCACCTGCCCCTC GCCTCCCTGGTCTCCATCAACACAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGAC TACGAGGCCCTGCAGGCTTTCGACTTCCGCGTGGGCGCCACAGACCGCGGCTCCCCGGCT TTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCC GAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCC TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCAC AATGGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTG GTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCAAGTG CTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTCCCTGAGGCGGCACCGGCCCAG GCCCAGGCCGACTCGCTCACCGTCTACTTGGTGGTGGCGTTGGCCTCGGTGTCTTCGCTC TTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCC TCGGTGGGAAGCTGCTCGGTGCCTAAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGC GGCACCGGGACCCTTTCCCAGAGCTACCAGTACGAGGTGTGTCTGACGGGAGGTTCCGAG ACAAATGAATTCAAGTTCCTAAAACCGGTTATCCCTAATATCCAGGCAAAAGGTCTTGGG AAGAATAGTGAAGAAAACTCCACCTTTCGAAATAGCTTTGGATTTAATTTT
Cloned ORF protein sequence for pF1KB4009 Download>KIBB4009 797 aa MENQGTRTQQIRQVLLLFVLLGMSQAGSETWSFSVAEEMQSGSFVGNLAKDLGLKVRELS SRGARVVSNDKKQRLQLDINTGDLLLSETLDREELCGSIEPCVLHLQVLMQNPTQFLQIE LQVRDINDHSPIFSEKQMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTISPNSHFHI KMRVIPDNRKYPELVLDKALDYEELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSP EFEQAFYEVKIRENSILGSLILIVSAWDLDSGTNGEICYTFSHASEDIRKTFEINQKSGE ITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPENT PETVVMVFSIQDIDSGDNGRIVCSIPEDLPFVLKSSVENYHTLETERPLDRESTAEYNIT ITVTDLGIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS GTNAQVNYSLLPPQDLHLPLASLVSINTDNGHLFALRSLDYEALQAFDFRVGATDRGSPA LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLQV LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA SVGSCSVPKGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSETNEFKFLKPVIPNIQAKGLG KNSEENSTFRNSFGFNF
Nucleotide Sequence (with vector) for pF1KB4009 Download>pF1KB4009 5504 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGAACCAA GGGACACGCACTCAGCAGATAAGGCAAGTCCTGCTTCTCTTTGTTTTGCTCGGAATGTCT CAGGCGGGCTCTGAAACCTGGAGCTTTTCTGTGGCAGAAGAAATGCAGAGCGGGAGTTTT GTAGGCAATCTGGCAAAGGACCTGGGGCTGAAGGTGAGAGAACTGTCCTCACGGGGGGCT CGGGTGGTCTCTAATGATAAGAAACAGCGTTTGCAGCTGGACATAAACACTGGGGATTTG CTCTTAAGTGAAACACTAGACAGGGAGGAGCTCTGCGGTTCCATCGAGCCTTGCGTGCTA CATTTGCAGGTGTTAATGCAAAACCCCACGCAGTTTTTACAAATTGAGCTTCAGGTCAGG GATATAAATGATCACTCTCCCATCTTCTCGGAAAAACAAATGCTCCTAGAAATCCCAGAG AACAGTCCCGTTGGTGCTGTGTTCTTACTAGAAAGTGCGAAGGATTTAGATGTAGGAATC AATGCTGTAAAAAGCTACACAATAAGCCCCAACTCTCATTTTCACATTAAAATGAGAGTC ATTCCAGACAATAGGAAATACCCCGAGTTAGTTCTGGACAAGGCGCTGGATTATGAAGAG CTCCCGGAGCTCAGTTTCATCCTCTCTGCTCTGGATGGTGGGTCCCCTCCCAGGTCTGGA ACTGCCTTGGTCAGGGTGGTGGTTGTGGACATTAATGACAACTCCCCTGAATTTGAGCAG GCTTTTTATGAGGTGAAGATTCGGGAGAATAGCATCCTTGGCTCGCTGATTTTGATTGTC TCAGCTTGGGATTTAGACTCTGGAACAAATGGTGAAATATGCTATACCTTTTCCCATGCC TCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGAGAAATTACTTTAAGA GCACCTCTGGATTTTGAAACGATTGAGTCATACTCAATAATCATTCAAGCCACAGATGGG GGAGGACTTTTTGGAAAATCTACAGTCATAATTCACGTGATAGATGTAAATGACAATGCT CCTGAAATCACTGTGTCATCAATTACCAGTCCAATCCCAGAAAATACGCCAGAGACCGTG GTTATGGTTTTTAGTATCCAAGATATAGACTCTGGGGACAACGGAAGAATTGTTTGTTCC ATTCCGGAAGACCTCCCATTCGTGCTAAAATCTTCAGTTGAGAATTACCACACGTTGGAA ACAGAGAGACCACTGGACAGAGAGAGCACAGCCGAGTACAATATCACCATCACCGTCACC GACTTGGGGATACCCAGGCTGAAAACCGAGCACAACACAACTGTGTTGGTCTCTGACGTC AATGACAACGCCCCCACCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAAC AGCCCCGCCCTGCACATCGGCAGTGTCAGCGCTACAGACAGAGACTCAGGCACCAACGCC CAGGTCAACTACTCGCTACTCCCGCCCCAGGACCTGCACCTGCCCCTCGCCTCCCTGGTC TCCATCAACACAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGACTACGAGGCCCTG CAGGCTTTCGACTTCCGCGTGGGCGCCACAGACCGCGGCTCCCCGGCTTTGAGCAGCGAG GCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGCTGTACCCG CTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTAC CTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTAC CAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGCGAGGTG CGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTC AAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCAAGTGCTCCTGGTGGAC GGCTTCTCCCAGCCCTACCTGCCGCTCCCTGAGGCGGCACCGGCCCAGGCCCAGGCCGAC TCGCTCACCGTCTACTTGGTGGTGGCGTTGGCCTCGGTGTCTTCGCTCTTCCTCTTCTCG GTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGAAGC TGCTCGGTGCCTAAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGCGGCACCGGGACC CTTTCCCAGAGCTACCAGTACGAGGTGTGTCTGACGGGAGGTTCCGAGACAAATGAATTC AAGTTCCTAAAACCGGTTATCCCTAATATCCAGGCAAAAGGTCTTGGGAAGAATAGTGAA GAAAACTCCACCTTTCGAAATAGCTTTGGATTTAATTTTGTTTAAACGAATTCGAGCTCG GTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAA AGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCT TGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTC GCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTAC CTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCAT CCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCC CTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCC TCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATC TGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTT GAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTAT GACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAG GGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGAC GAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGAC GTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTC CTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGG CTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAG CGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCAT CAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAG GATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGC TTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCG TTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTG CTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAG TTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTA TAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGA GTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCC TTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGT TTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGC GCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTC TGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGG CGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCG GTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGA ACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGC GGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGG GGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCG ATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTT TTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCC TGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAAC GCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGA TTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAAT TTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCT GCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCC ACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTC CGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGG TCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCC GAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGT AGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTT TTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATT TGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCA GGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTC TTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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