XCR1 ORF clone FXC03028

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Flexi ORF Clone FXC03028

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Clone info.

Species

human

Clone Name

pF1KB8796 Sequence (with vector) Restriction Map

Product ID

FXC03028

HaloTag Clone PID

FHC03028

ORF Sequence

DNA sequence (999 bp)
Protein sequence (333 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464479]

Gene

KIBB8796

Symbol

XCR1

Alias : CCXCR1, GPR5

Description

chemokine (C motif) receptor 1, transcript variant 1

Original Clone ID

cp00831

Features of the cloned ORF sequence

Description

Length: 999 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 333 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS2736.1 1.8e-106 100.0 XCR1 CCDS43078.1 1.6e-29 36.5 CCR2 CCDS46813.1 2.2e-29 36.7 CCR2 CCDS43069.1 4.9e-29 37.0 CX3CR1 CCDS54571.1 5.2e-29 37.0 CX3CR1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR005393 22 36 PR01568 C chemokine lymphotactin receptor IPR000276 33 57 PR00237 GPCR IPR005393 57 70 PR01568 C chemokine lymphotactin receptor IPR000276 66 87 PR00237 GPCR IPR005393 106 116 PR01568 C chemokine lymphotactin receptor IPR000276 109 131 PR00237 GPCR IPR005393 130 146 PR01568 C chemokine lymphotactin receptor IPR000276 145 166 PR00237 GPCR IPR005393 157 172 PR01568 C chemokine lymphotactin receptor IPR005393 178 194 PR01568 C chemokine lymphotactin receptor IPR000276 186 209 PR00237 GPCR IPR005393 213 223 PR01568 C chemokine lymphotactin receptor IPR000276 223 247 PR00237 GPCR IPR000276 269 295 PR00237 GPCR IPR005393 321 333 PR01568 C chemokine lymphotactin receptor HMMPfam IPR000276 48 287 PF00001 GPCR ProfileScan IPR017452 48 287 PS50262 GPCR
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 30 ATLATTVLYCLVFLLSLVGNSLV 52 PRIMARY 23 2 66 TNIFILNLCLSDLVFACLLPVWI 88 PRIMARY 23 3 99 DFLCKLLNMIFSISLYSSIFFLT 121 PRIMARY 23 4 146 RVLVTMAVWVASILSSILDTIFH 168 PRIMARY 23 5 187 VYQHNLFFLLSLGIILFCYVEIL 209 PRIMARY 23 6 222 RTVKLIFAIVVAYFLSWGPYNFT 244 SECONDARY 23 7 270 LICRNLAFSHCCFNPVLYVFVGV 292 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016861685 333 600552 100.0 100.0 XP_016861686 333 600552 100.0 100.0 XP_016861687 333 600552 100.0 100.0 XP_016861688 333 600552 100.0 100.0 XP_016861689 333 600552 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8796 Download

>KIBB8796  999 bp
ATGGAGTCCTCAGGCAACCCAGAGAGCACCACCTTTTTTTACTATGACCTTCAGAGCCAG
CCGTGTGAGAACCAGGCCTGGGTCTTTGCTACCCTCGCCACCACTGTCCTATACTGCCTG
GTGTTTCTCCTCAGCCTAGTGGGCAACAGCCTGGTCCTGTGGGTCCTGGTGAAGTATGAG
AGCCTGGAGTCCCTCACCAACATCTTCATCCTCAACCTGTGCCTCTCAGACCTGGTGTTC
GCCTGCTTGTTGCCTGTGTGGATCTCCCCATACCACTGGGGCTGGGTGCTGGGAGACTTC
CTCTGCAAACTCCTCAATATGATCTTCTCCATCAGCCTCTACAGCAGCATCTTCTTCCTG
ACCATCATGACCATCCACCGCTACCTGTCGGTAGTGAGCCCCCTCTCCACCCTGCGCGTC
CCCACCCTCCGCTGCCGGGTGCTGGTGACCATGGCTGTGTGGGTAGCCAGCATCCTGTCC
TCCATCCTCGACACCATCTTCCACAAGGTGCTTTCTTCGGGCTGTGATTATTCCGAACTC
ACGTGGTACCTCACCTCCGTCTACCAGCACAACCTCTTCTTCCTGCTGTCCCTGGGGATT
ATCCTGTTCTGCTACGTGGAGATCCTCAGGACCCTGTTCCGCTCACGCTCCAAGCGGCGC
CACCGCACGGTCAAGCTCATCTTCGCCATCGTGGTGGCCTACTTCCTCAGCTGGGGTCCC
TACAACTTCACCCTGTTTCTGCAGACGCTGTTTCGGACCCAGATCATCCGGAGCTGCGAG
GCCAAACAGCAGCTAGAATACGCCCTGCTCATCTGCCGCAACCTCGCCTTCTCCCACTGC
TGCTTTAACCCGGTGCTCTATGTCTTCGTGGGGGTCAAGTTCCGCACACACCTGAAACAT
GTTCTCCGGCAGTTCTGGTTCTGCCGGCTGCAGGCACCCAGCCCAGCCTCGATCCCCCAC
TCCCCTGGTGCCTTCGCCTATGAGGGCGCCTCCTTCTAC

ORF Protein

Cloned ORF protein sequence for pF1KB8796 Download

>KIBB8796  333 aa
MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8796 Download

>pF1KB8796  4112 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGTCCTCA
GGCAACCCAGAGAGCACCACCTTTTTTTACTATGACCTTCAGAGCCAGCCGTGTGAGAAC
CAGGCCTGGGTCTTTGCTACCCTCGCCACCACTGTCCTATACTGCCTGGTGTTTCTCCTC
AGCCTAGTGGGCAACAGCCTGGTCCTGTGGGTCCTGGTGAAGTATGAGAGCCTGGAGTCC
CTCACCAACATCTTCATCCTCAACCTGTGCCTCTCAGACCTGGTGTTCGCCTGCTTGTTG
CCTGTGTGGATCTCCCCATACCACTGGGGCTGGGTGCTGGGAGACTTCCTCTGCAAACTC
CTCAATATGATCTTCTCCATCAGCCTCTACAGCAGCATCTTCTTCCTGACCATCATGACC
ATCCACCGCTACCTGTCGGTAGTGAGCCCCCTCTCCACCCTGCGCGTCCCCACCCTCCGC
TGCCGGGTGCTGGTGACCATGGCTGTGTGGGTAGCCAGCATCCTGTCCTCCATCCTCGAC
ACCATCTTCCACAAGGTGCTTTCTTCGGGCTGTGATTATTCCGAACTCACGTGGTACCTC
ACCTCCGTCTACCAGCACAACCTCTTCTTCCTGCTGTCCCTGGGGATTATCCTGTTCTGC
TACGTGGAGATCCTCAGGACCCTGTTCCGCTCACGCTCCAAGCGGCGCCACCGCACGGTC
AAGCTCATCTTCGCCATCGTGGTGGCCTACTTCCTCAGCTGGGGTCCCTACAACTTCACC
CTGTTTCTGCAGACGCTGTTTCGGACCCAGATCATCCGGAGCTGCGAGGCCAAACAGCAG
CTAGAATACGCCCTGCTCATCTGCCGCAACCTCGCCTTCTCCCACTGCTGCTTTAACCCG
GTGCTCTATGTCTTCGTGGGGGTCAAGTTCCGCACACACCTGAAACATGTTCTCCGGCAG
TTCTGGTTCTGCCGGCTGCAGGCACCCAGCCCAGCCTCGATCCCCCACTCCCCTGGTGCC
TTCGCCTATGAGGGCGCCTCCTTCTACGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT
CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA
AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA
ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA
TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT
TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA
CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA
GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT
GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG
GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA
TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA
CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT
CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG
CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA
GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC
CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT
GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT
CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG
CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG
ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC
ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT
GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC
GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG
GGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAA
GGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAA
AGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCT
CCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGAC
AGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCC
GACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTC
TCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTG
TGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGA
GTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAG
CAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTA
CACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAG
AGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTG
CAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTAC
GGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATC
AAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATG
GCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGT
AATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCG
ATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCG
CTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTG
CCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGA
TCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACA
GAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGT
GAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCA
GGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT
TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGA
AGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA
AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCAT