FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3860, 348 aa
  1>>>pF1KB3860 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0813+/- 0.001; mu= 2.4809+/- 0.060
 mean_var=366.8548+/-77.341, 0's: 0 Z-trim(116.6): 788  B-trim: 1011 in 1/50
 Lambda= 0.066962
 statistics sampled from 16358 (17285) to 16358 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.531), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8          ( 348) 2401 245.2   6e-65
CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20        ( 307) 1067 116.3 3.5e-26
CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8           ( 268)  599 71.0 1.3e-12
CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16       ( 292)  581 69.3 4.6e-12


>>CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8               (348 aa)
 initn: 2401 init1: 2401 opt: 2401  Z-score: 1279.5  bits: 245.2 E(32554): 6e-65
Smith-Waterman score: 2401; 99.7% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KB3 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 DGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DGRSRRKASNAGAAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA
              250       260       270       280       290       300

              310       320       330       340        
pF1KB3 FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
              310       320       330       340        

>>CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20             (307 aa)
 initn: 1334 init1: 994 opt: 1067  Z-score: 583.6  bits: 116.3 E(32554): 3.5e-26
Smith-Waterman score: 1244; 58.5% identity (72.2% similar) in 349 aa overlap (1-341:1-305)

               10                20        30        40        50  
pF1KB3 MPRSFLVKKVKLDAFSSAD--------LESAYGRARSDLGAPLHDKGYLSDYVGPSSVYD
       :::::::::.: :.:. .         ::.::  .     .:  :.::    . ::: ::
CCDS13 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAY--VLPGARGPPGDNGYAPHRLPPSS-YD
               10        20        30          40        50        

             60        70        80        90       100       110  
pF1KB3 GDAEAALLKGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGY
       .: . .:  .:. :: :  :.  :        . : .:.  :..    :. :.:::...:
CCDS13 ADQKPGLELAPA-EPAYPPAAPEEY-------SDPESPQSSLSAR---YFRGEAAVTDSY
        60         70        80               90          100      

            120       130       140       150       160       170  
pF1KB3 AADAFFITDGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRA
       . :::::.::::::. ...:              :::::.: :::       :::.: ::
CCDS13 SMDAFFISDGRSRRRRGGGG--------------GDAGGSGDAGG------AGGRAG-RA
        110       120                     130             140      

            180       190       200       210       220       230  
pF1KB3 GAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYV
       ::          ::.: ::::.::::::::::::::::::::::::::::.::::::.::
CCDS13 GA---------QAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYV
                  150       160       170       180       190      

            240       250       260       270       280       290  
pF1KB3 SMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLR
       ::::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLR
        200       210       220       230       240       250      

            300       310       320       330       340        
pF1KB3 AHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
       :::::::::::..:..: :::::::::.:: :.:: :..   : .:: :       
CCDS13 AHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTPAGPAS     
        260       270       280       290       300            

>>CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8                (268 aa)
 initn: 794 init1: 575 opt: 599  Z-score: 339.9  bits: 71.0 E(32554): 1.3e-12
Smith-Waterman score: 599; 58.0% identity (78.3% similar) in 138 aa overlap (190-327:127-264)

     160       170       180       190       200       210         
pF1KB3 LGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQ
                                     .  :. :.:::.: :.:..::: : . .:.
CCDS61 KDHSGSESPISDEEERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSR
        100       110       120       130       140       150      

     220       230       240       250       260       270         
pF1KB3 LARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCA
        .  :  : : :::. :. ::. :: :   : .::::::::::::::.:.:::::::.: 
CCDS61 KSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCP
        160       170       180       190       200       210      

     280       290       300       310       320       330         
pF1KB3 HCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPA
       ::..:::::::::::.::::  :..::: :.:.:.  : :.:: ::.:            
CCDS61 HCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH        
        220       230       240       250       260                

     340        
pF1KB3 PPQLSPVQA

>>CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16            (292 aa)
 initn: 743 init1: 528 opt: 581  Z-score: 330.1  bits: 69.3 E(32554): 4.6e-12
Smith-Waterman score: 581; 49.7% identity (68.7% similar) in 163 aa overlap (168-330:129-291)

       140       150       160       170       180       190       
pF1KB3 STASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECG
                                     :  : ::  .  ..     : :   : .: 
CCDS32 RAAIVPLKDSLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCH
      100       110       120       130       140       150        

       200       210       220       230       240       250       
pF1KB3 KTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAF
       : : : ..:.::.: :  :.   .  :  : : :.:. :. ::. :: :   : .:::::
CCDS32 KPYHTLAGLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAF
      160       170       180       190       200       210        

       260       270       280       290       300       310       
pF1KB3 SRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKS
       :::::::::.:.::::::..:.::..:::::::::::.::::  :...:.:: :.:.  :
CCDS32 SRPWLLQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMS
      220       230       240       250       260       270        

       320       330       340        
pF1KB3 YLNKHYESACFKGGAGGPAAPAPPQLSPVQA
        : .: ::.:  :                  
CCDS32 LLARHEESGCCPGP                 
      280       290                   




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:04:45 2016 done: Thu Nov  3 14:04:45 2016
 Total Scan time:  3.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]