-
SpecieshumanProduct IDFXC01237Cloning SiteSgfI-PmeIGeneKIBB3061SymbolZNF250
Alias : ZFP647, ZNF647Descriptionzinc finger protein 250, transcript variant 2Original Clone IDhg04778
Length: 1665 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 555 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS55282.1 7e-127 100.0 ZNF250 CCDS34972.1 3.3e-126 99.1 ZNF250 CCDS74472.1 1.8e-55 53.6 ZNF135 CCDS74471.1 1.9e-55 53.6 ZNF135 CCDS12970.2 1.9e-55 53.6 ZNF135
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001909 17 57 PF01352 Krueppel-associated box IPR007087 194 216 PF00096 Zinc finger IPR007087 222 244 PF00096 Zinc finger IPR007087 306 328 PF00096 Zinc finger IPR007087 334 356 PF00096 Zinc finger IPR007087 362 384 PF00096 Zinc finger IPR007087 390 412 PF00096 Zinc finger IPR007087 418 440 PF00096 Zinc finger IPR007087 474 496 PF00096 Zinc finger IPR007087 502 524 PF00096 Zinc finger IPR007087 530 552 PF00096 Zinc finger HMMSmart IPR001909 17 77 SM00349 Krueppel-associated box IPR015880 194 216 SM00355 Zinc finger IPR015880 222 244 SM00355 Zinc finger IPR015880 250 272 SM00355 Zinc finger IPR015880 278 300 SM00355 Zinc finger IPR015880 306 328 SM00355 Zinc finger IPR015880 334 356 SM00355 Zinc finger IPR015880 362 384 SM00355 Zinc finger IPR015880 390 412 SM00355 Zinc finger IPR015880 418 440 SM00355 Zinc finger IPR015880 446 468 SM00355 Zinc finger IPR015880 474 496 SM00355 Zinc finger IPR015880 502 524 SM00355 Zinc finger IPR015880 530 552 SM00355 Zinc finger ProfileScan IPR001909 17 88 PS50805 Krueppel-associated box IPR007087 194 221 PS50157 Zinc finger IPR007087 222 249 PS50157 Zinc finger IPR007087 250 277 PS50157 Zinc finger IPR007087 278 305 PS50157 Zinc finger IPR007087 306 333 PS50157 Zinc finger IPR007087 334 361 PS50157 Zinc finger IPR007087 362 389 PS50157 Zinc finger IPR007087 390 417 PS50157 Zinc finger IPR007087 418 445 PS50157 Zinc finger IPR007087 446 473 PS50157 Zinc finger IPR007087 474 501 PS50157 Zinc finger IPR007087 502 529 PS50157 Zinc finger IPR007087 530 555 PS50157 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001276331 616 604077 53.6 83.8 XP_016882731 621 604077 52.9 85.9 XP_016882730 628 604077 53.6 83.8 XP_016882729 658 604077 53.6 83.8 NP_001276330 658 604077 53.6 83.8 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB3061 Download>KIBB3061 1665 bp ATGGCAGCAGCCAGACTCCTGCCAGTGCCGGCAGGACCCCAGGCCAAGCTGACCTTCGAG GATGTGGCTGTGCTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGC CTCTACAGAAATGTGATGATGGAAACCTATGGGAATGTAGTCTCATTGGGACTTCCAGGA TCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGG AAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACTCAGACAACCTCAAATATGAC CACACTACAGCCTGTACACAACAAGACAGTTTATCTTGTCCATGGGAATGTGAAACCAAG GGAGAGAGTCAAAATACAGACTTGAGTCCGAAGCCATTAATTTCAGAGCAAACAGTGATT CTGGGGAAAACACCCTTGGGGAGGATTGATCAAGAAAATAATGAAACAAAGCAAAGCTTC TGTCTGAGTCCAAACTCTGTTGACCACCGTGAAGTTCAGGTCTTAAGCCAAAGCATGCCA CTCACTCCGCACCAGGCAGTGCCTAGTGGAGAGAGGCCCTACATGTGTGTTGAGTGTGGG AAGTGCTTTGGCCGGAGTTCCCACCTCCTTCAGCATCAGCGTATCCACACTGGAGAGAAG CCCTATGTGTGCAGTGTATGTGGGAAGGCCTTCAGCCAGAGCTCAGTCCTTAGTAAACAC AGGAGAATTCACACAGGTGAGAAGCCCTATGAGTGTAATGAGTGTGGAAAAGCCTTTAGA GTGAGCTCAGATCTTGCTCAGCATCACAAGATACATACAGGAGAGAAGCCTCACGAATGT CTTGAGTGTCGGAAAGCCTTCACTCAACTCTCACATCTCATTCAGCACCAGCGGATCCAC ACGGGAGAAAGGCCATATGTGTGTCCGTTGTGTGGGAAAGCCTTCAACCATAGCACTGTT CTGCGGAGCCACCAGAGGGTACACACTGGGGAGAAGCCTCACAGGTGCAATGAGTGTGGG AAAACCTTCAGTGTGAAGAGGACACTGCTGCAGCACCAGAGGATCCACACCGGGGAGAAG CCCTACACGTGCAGCGAGTGTGGGAAGGCCTTCAGCGACCGCTCAGTCCTCATTCAGCAC CACAACGTGCACACCGGGGAGAAGCCCTATGAGTGCAGTGAGTGTGGGAAGACCTTCAGC CACCGCTCCACACTGATGAATCACGAGCGGATCCACACCGAGGAAAAGCCCTATGCATGC TACGAATGTGGGAAGGCCTTCGTTCAGCACTCACACCTGATCCAGCACCAGAGAGTCCAC ACTGGGGAGAAGCCCTATGTGTGTGGTGAATGTGGGCACGCCTTCAGTGCACGCCGGTCT CTGATCCAGCATGAGAGAATCCACACAGGTGAAAAGCCCTTCCAGTGCACAGAATGTGGC AAAGCCTTCAGCCTGAAAGCAACTCTGATTGTGCACCTGAGGACCCACACGGGCGAGAAG CCATATGAGTGCAATAGCTGCGGGAAGGCCTTCAGCCAGTACTCAGTGCTCATCCAGCAC CAGCGGATCCACACAGGCGAGAAGCCCTATGAGTGCGGGGAGTGTGGGCGTGCCTTCAAC CAGCATGGCCACCTAATCCAGCACCAGAAAGTGCACAGAAAGTTG
Cloned ORF protein sequence for pF1KB3061 Download>KIBB3061 555 aa MAAARLLPVPAGPQAKLTFEDVAVLLSQDEWDRLCPAQRGLYRNVMMETYGNVVSLGLPG SKPDIISQLERGEDPWVLDRKGAKKSQGLWSDYSDNLKYDHTTACTQQDSLSCPWECETK GESQNTDLSPKPLISEQTVILGKTPLGRIDQENNETKQSFCLSPNSVDHREVQVLSQSMP LTPHQAVPSGERPYMCVECGKCFGRSSHLLQHQRIHTGEKPYVCSVCGKAFSQSSVLSKH RRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHECLECRKAFTQLSHLIQHQRIH TGERPYVCPLCGKAFNHSTVLRSHQRVHTGEKPHRCNECGKTFSVKRTLLQHQRIHTGEK PYTCSECGKAFSDRSVLIQHHNVHTGEKPYECSECGKTFSHRSTLMNHERIHTEEKPYAC YECGKAFVQHSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQCTECG KAFSLKATLIVHLRTHTGEKPYECNSCGKAFSQYSVLIQHQRIHTGEKPYECGECGRAFN QHGHLIQHQKVHRKL
Nucleotide Sequence (with vector) for pF1KB3061 Download>pF1KB3061 4778 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCAGCAGCC AGACTCCTGCCAGTGCCGGCAGGACCCCAGGCCAAGCTGACCTTCGAGGATGTGGCTGTG CTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGCCTCTACAGAAAT GTGATGATGGAAACCTATGGGAATGTAGTCTCATTGGGACTTCCAGGATCCAAGCCTGAC ATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAG AAGAGCCAGGGCCTGTGGAGTGACTACTCAGACAACCTCAAATATGACCACACTACAGCC TGTACACAACAAGACAGTTTATCTTGTCCATGGGAATGTGAAACCAAGGGAGAGAGTCAA AATACAGACTTGAGTCCGAAGCCATTAATTTCAGAGCAAACAGTGATTCTGGGGAAAACA CCCTTGGGGAGGATTGATCAAGAAAATAATGAAACAAAGCAAAGCTTCTGTCTGAGTCCA AACTCTGTTGACCACCGTGAAGTTCAGGTCTTAAGCCAAAGCATGCCACTCACTCCGCAC CAGGCAGTGCCTAGTGGAGAGAGGCCCTACATGTGTGTTGAGTGTGGGAAGTGCTTTGGC CGGAGTTCCCACCTCCTTCAGCATCAGCGTATCCACACTGGAGAGAAGCCCTATGTGTGC AGTGTATGTGGGAAGGCCTTCAGCCAGAGCTCAGTCCTTAGTAAACACAGGAGAATTCAC ACAGGTGAGAAGCCCTATGAGTGTAATGAGTGTGGAAAAGCCTTTAGAGTGAGCTCAGAT CTTGCTCAGCATCACAAGATACATACAGGAGAGAAGCCTCACGAATGTCTTGAGTGTCGG AAAGCCTTCACTCAACTCTCACATCTCATTCAGCACCAGCGGATCCACACGGGAGAAAGG CCATATGTGTGTCCGTTGTGTGGGAAAGCCTTCAACCATAGCACTGTTCTGCGGAGCCAC CAGAGGGTACACACTGGGGAGAAGCCTCACAGGTGCAATGAGTGTGGGAAAACCTTCAGT GTGAAGAGGACACTGCTGCAGCACCAGAGGATCCACACCGGGGAGAAGCCCTACACGTGC AGCGAGTGTGGGAAGGCCTTCAGCGACCGCTCAGTCCTCATTCAGCACCACAACGTGCAC ACCGGGGAGAAGCCCTATGAGTGCAGTGAGTGTGGGAAGACCTTCAGCCACCGCTCCACA CTGATGAATCACGAGCGGATCCACACCGAGGAAAAGCCCTATGCATGCTACGAATGTGGG AAGGCCTTCGTTCAGCACTCACACCTGATCCAGCACCAGAGAGTCCACACTGGGGAGAAG CCCTATGTGTGTGGTGAATGTGGGCACGCCTTCAGTGCACGCCGGTCTCTGATCCAGCAT GAGAGAATCCACACAGGTGAAAAGCCCTTCCAGTGCACAGAATGTGGCAAAGCCTTCAGC CTGAAAGCAACTCTGATTGTGCACCTGAGGACCCACACGGGCGAGAAGCCATATGAGTGC AATAGCTGCGGGAAGGCCTTCAGCCAGTACTCAGTGCTCATCCAGCACCAGCGGATCCAC ACAGGCGAGAAGCCCTATGAGTGCGGGGAGTGTGGGCGTGCCTTCAACCAGCATGGCCAC CTAATCCAGCACCAGAAAGTGCACAGAAAGTTGGTTTAAACGAATTCGAGCTCGGTACCC GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAG GATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTC GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTT TCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTT GCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT ACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGC ACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAA GTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGG CTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAG ATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAG GTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAA CGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTT GTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACG GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTC TGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGC TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
more Linker info
