SGTA ORF clone FHC02651

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC02651

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Clone info.

Species

human

Clone Name

pFN21AB8195 Sequence (with vector) Restriction Map

Product ID

FHC02651

Flexi Clone PID

FXC02651

ORF Sequence

DNA sequence (939 bp)
Protein sequence (313 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464216]

Gene

KIBB8195

Symbol

SGTA

Alias : SGT, SGT1, Vpu, alphaSGT, hSGT

Description

small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha

Original Clone ID

cp00555

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 939 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 313 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS12094.1 3.4e-108 100.0 SGTA CCDS3988.1 7.1e-57 58.3 SGTB The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001440 96 124 PF00515 Tetratricopeptide TPR-1 IPR001440 126 157 PF00515 Tetratricopeptide TPR-1 IPR001440 160 192 PF00515 Tetratricopeptide TPR-1 HMMSmart IPR019734 91 124 SM00028 Tetratricopeptide repeat IPR019734 125 158 SM00028 Tetratricopeptide repeat IPR019734 159 192 SM00028 Tetratricopeptide repeat ProfileScan IPR019734 91 124 PS50005 Tetratricopeptide repeat IPR013026 91 192 PS50293 Tetratricopeptide repeat-containing IPR019734 125 158 PS50005 Tetratricopeptide repeat IPR019734 159 192 PS50005 Tetratricopeptide repeat
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011526480 313 603419 100.0 100.0 NP_003012 313 603419 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB8195 Download

>KIBB8195  939 bp
ATGGACAACAAGAAGCGCCTGGCCTACGCCATCATCCAGTTCCTGCATGACCAGCTCCGG
CACGGGGGCCTCTCGTCCGATGCTCAGGAGAGCTTGGAAGTCGCCATCCAGTGCCTGGAG
ACTGCGTTTGGGGTGACGGTAGAAGACAGTGACCTTGCGCTCCCTCAGACTCTGCCGGAG
ATATTTGAAGCGGCTGCCACGGGCAAGGAGATGCCGCAGGACCTGAGGAGCCCCGCGCGA
ACCCCGCCTTCCGAGGAGGACTCAGCAGAGGCAGAGCGCCTCAAAACCGAAGGAAACGAG
CAGATGAAAGTGGAAAACTTTGAAGCTGCCGTGCATTTCTACGGAAAAGCCATCGAGCTC
AACCCAGCCAACGCCGTCTATTTCTGCAACAGAGCCGCAGCCTACAGCAAACTCGGCAAC
TACGCAGGCGCGGTGCAGGACTGTGAGCGGGCCATCTGCATTGACCCGGCCTACAGCAAG
GCCTACGGCAGGATGGGCCTGGCGCTCTCCAGCCTCAACAAGCACGTGGAGGCCGTGGCT
TACTACAAGAAGGCTCTGGAGCTGGACCCCGACAACGAGACATACAAGTCCAACCTCAAG
ATAGCGGAGCTGAAGCTGCGGGAGGCCCCCAGCCCCACGGGAGGCGTGGGCAGCTTCGAC
ATCGCCGGCCTGCTGAACAACCCTGGCTTCATGAGCATGGCTTCGAACCTAATGAACAAT
CCCCAGATTCAGCAGCTCATGTCCGGCATGATTTCGGGTGGCAACAACCCCTTGGGAACT
CCCGGCACCAGCCCCTCGCAGAACGACCTGGCCAGCCTCATCCAGGCGGGCCAGCAGTTT
GCCCAGCAGATGCAGCAGCAGAACCCAGAGTTGATAGAGCAGCTCAGGAGCCAGATCCGG
AGTCGGACGCCCAGCGCCAGCAACGACGACCAGCAGGAG

ORF Protein

Cloned ORF protein sequence for pFN21AB8195 Download

>KIBB8195  313 aa
MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
PQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR
SRTPSASNDDQQE

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB8195 Download

>pFN21AB8195  5644 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGACAACAAGAAGCGCCTGGCCTACGCCATCAT
CCAGTTCCTGCATGACCAGCTCCGGCACGGGGGCCTCTCGTCCGATGCTCAGGAGAGCTT
GGAAGTCGCCATCCAGTGCCTGGAGACTGCGTTTGGGGTGACGGTAGAAGACAGTGACCT
TGCGCTCCCTCAGACTCTGCCGGAGATATTTGAAGCGGCTGCCACGGGCAAGGAGATGCC
GCAGGACCTGAGGAGCCCCGCGCGAACCCCGCCTTCCGAGGAGGACTCAGCAGAGGCAGA
GCGCCTCAAAACCGAAGGAAACGAGCAGATGAAAGTGGAAAACTTTGAAGCTGCCGTGCA
TTTCTACGGAAAAGCCATCGAGCTCAACCCAGCCAACGCCGTCTATTTCTGCAACAGAGC
CGCAGCCTACAGCAAACTCGGCAACTACGCAGGCGCGGTGCAGGACTGTGAGCGGGCCAT
CTGCATTGACCCGGCCTACAGCAAGGCCTACGGCAGGATGGGCCTGGCGCTCTCCAGCCT
CAACAAGCACGTGGAGGCCGTGGCTTACTACAAGAAGGCTCTGGAGCTGGACCCCGACAA
CGAGACATACAAGTCCAACCTCAAGATAGCGGAGCTGAAGCTGCGGGAGGCCCCCAGCCC
CACGGGAGGCGTGGGCAGCTTCGACATCGCCGGCCTGCTGAACAACCCTGGCTTCATGAG
CATGGCTTCGAACCTAATGAACAATCCCCAGATTCAGCAGCTCATGTCCGGCATGATTTC
GGGTGGCAACAACCCCTTGGGAACTCCCGGCACCAGCCCCTCGCAGAACGACCTGGCCAG
CCTCATCCAGGCGGGCCAGCAGTTTGCCCAGCAGATGCAGCAGCAGAACCCAGAGTTGAT
AGAGCAGCTCAGGAGCCAGATCCGGAGTCGGACGCCCAGCGCCAGCAACGACGACCAGCA
GGAGGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCA
TGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCG
CTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATAC
ATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAA
ATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAAC
AACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGC
AAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCG
TTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGC
GGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTG
CGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGA
CAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACAT
TTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCA
GAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATC
GAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCA
ATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGG
CAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCA
GTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATA
ACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAG
CTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCG
GAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCA
ACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTA
ATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCT
GGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCA
GCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAG
GCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCAT
TGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGG
TAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCC
AGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCC
CCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGAC
TATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCC
TGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATA
GCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGC
ACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCA
ACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAG
CGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTA
GAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTG
GTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGC
AGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGT
CTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAA
GGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCT
TCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGT
GGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGC
GGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAA
CGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTC
GTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAG
ATCT