Gene/Protein Characteristic Table for KIAA0330
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Product ID ORK00053
Accession No AB002328
Description calcineurin binding protein 1, transcript variant 2
Clone name hg00894s1
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
cDNA sequence DNA sequence (7445 bp)
Predicted protein sequence (2224 aa)
Flexi ORF Clone FXC00053
Source Human adult brain
Note We replaced hg00894, former representative clones for KIAA0330 with hg00894s1. (2003/4/2)
Features of the cloned cDNA sequence
Description

Length: 7445 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 432 bp
Genome contig ID gi89161203f_22637903
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TTTTTGGTTGCTTTTCTAATAAAGATGGAACAGTT
Flanking genome sequence
(266695 - 266744)
----+----*----+----*----+----*----+----*----+----*
GTCTTTGCCTCTTTGCTCACCTCTAGGGGGCAATCTGGCAGAGTCTCTGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 22 f 22737903 22904596 37 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 2224 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9Y6J0 0 100.0 Calcineurin-bin...
Homo sapiens
XP_515030 0 99.3 calcineurin bin...
Pan troglodytes
XP_543529 0 90.9 similar to Calc...
Canis lupus fam...
EDL31891 0 88.7 calcineurin bin...
Mus musculus
O88480 0 88.0 Calcineurin-bin...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001440 94 127 PF00515 Tetratricopeptide TPR_1
IPR001440 128 161 PF00515 Tetratricopeptide TPR_1
IPR001440 1130 1143 PF00515 Tetratricopeptide TPR_1
IPR015134 2160 2194 PF09047 MEF2 binding
HMMSmart IPR013026 40 73 SM00028 Tetratricopeptide region
IPR013026 94 127 SM00028 Tetratricopeptide region
IPR013026 128 161 SM00028 Tetratricopeptide region
IPR013026 619 652 SM00028 Tetratricopeptide region
IPR013026 1059 1092 SM00028 Tetratricopeptide region
ProfileScan IPR013026 94 127 PS50005 Tetratricopeptide region
IPR013026 94 161 PS50293 Tetratricopeptide region
IPR013026 128 161 PS50005 Tetratricopeptide region
IPR013026 619 652 PS50005 Tetratricopeptide region
IPR013026 1059 1092 PS50005 Tetratricopeptide region
IPR013026 1059 1092 PS50293 Tetratricopeptide region
ScanRegExp IPR001091 1349 1354 PS00093 Site-specific DNA-methyltransferase (cytosine-N4-specific)
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f AAAAAGGGTGAGGGGTGAGCC
Primer_r TGTGAAGGTGGATTGGTCGCC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 22
Experimental conditions
Panel name GeneBridge 4
Primer_f AAAAAGGGTGAGGGGTGAGCC
Primer_r TGTGAAGGTGGATTGGTCGCC
PCR product length 181 bp
PCR conditions 95 °C15 sec68 °C60 sec30 cycles
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