hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23572702/chunk_1/iprscan-20080501-23572702.nocrc
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Query sequence: KIAA0330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  57.9    1.3e-12   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/5      40    73 ..     1    34 []     0.8  4.1e+02
SM00028    2/5      94   127 ..     1    34 []    22.6    0.054
SM00028    3/5     128   161 ..     1    34 []    15.3      8.7
SM00028    4/5     619   652 ..     1    34 []    12.7       18
SM00028    5/5    1059  1092 ..     1    34 []     6.5       91

Alignments of top-scoring domains:
SM00028: domain 1 of 5, from 40 to 73: score 0.8, E = 4.1e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a aly +++ + k  +++e  ++y + Le        
    KIAA0330    40    AFALYHKALDLQKHDRFEESAKAYHELLEASLLR    73   

SM00028: domain 2 of 5, from 94 to 127: score 22.6, E = 0.054
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      + +++nl+++  +++d++ A+e+y +A+ ld ++   
    KIAA0330    94    YSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTD    127  

SM00028: domain 3 of 5, from 128 to 161: score 15.3, E = 8.7
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +  +y +G++ l+l ++  A  ++e+ L+ +P++   
    KIAA0330   128    VNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDH    161  

SM00028: domain 4 of 5, from 619 to 652: score 12.7, E = 18
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++++  ++  + ++gd ++A+e y+ + e+  +    
    KIAA0330   619    VRVYWLKARFLALQGDMEQALENYDICTEMLQSS    652  

SM00028: domain 5 of 5, from 1059 to 1092: score 6.5, E = 91
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e +y l+  ++k+++  +Ai++y   + + Pn    
    KIAA0330  1059    NELYYLLADYHFKNKEQSKAIKFYMHDICICPNR    1092 

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