Gene/Protein Characteristic Table for KIAA0038
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Product ID ORK01656
Accession No D26068
Description eukaryotic translation initiation factor 4H, transcript variant 2
Clone name ha01502
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (2477 bp)
Predicted protein sequence (230 aa)
Flexi ORF Clone FXC01656
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0038 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 2477 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1782 bp
Genome contig ID gi89161213f_73126642
PolyA signal sequence
Flanking genome sequence
(122718 - 122767)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 7 f 73226642 73249358 6 99.2 Perfect prediction
Ensembl gnome browser 7 r 27462523 27465001 1 98.0 Perfect prediction
Features of the protein sequence

Length: 230 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAF75557 5.4e-88 100.0 wbscr1 [Homo sa...
Homo sapiens
BAE89020 6.2e-88 99.6 unnamed protein...
Macaca fascicularis
XP_527788 1.4e-87 99.6 similar to Wbsc...
Pan troglodytes
AAD34860 1.9e-87 99.1 Wbscr1 alternat...
Mus musculus
Q1JPH6 2.9e-87 99.1 Eukaryotic tran...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 46 115 PF00076 RNA recognition motif
HMMSmart IPR000504 45 116 SM00360 RNA recognition motif
ProfileScan IPR000504 44 120 PS50102 RNA recognition motif
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 7
Experimental conditions
Panel name Genebridge 4
PCR product length 131 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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