# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01502.fasta.huge -Q ../query/KIAA0038.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0038, 230 aa
 vs ./tmplib.23147 library

1987275 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.8097+/-0.00588; mu= 7.6281+/- 0.400
 mean_var=131.8700+/-30.000, 0's: 0 Z-trim: 2  B-trim: 3 in 1/39
 Lambda= 0.111687

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0660  ( 490 res)   hk01902                     ( 490)  150 34.8  0.0079


>>KIAA0660  ( 490 res)   hk01902                          (490 aa)
 initn: 138 init1:  54 opt: 150  Z-score: 142.6  bits: 34.8 E(): 0.0079
Smith-Waterman score: 150;  25.316% identity (51.899% similar) in 158 aa overlap (19-174:314-466)

                           10        20        30        40        
KIAA00             RQMADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYV
                                     : : .::.   . : ... .     .  .:
KIAA06 PRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFV
           290       300       310       320       330       340   

       50        60         70        80        90       100       
KIAA00 GNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGAL
       :::: .  ....  .: .. ..  .:.       :. .: .: ::. . ... :     .
KIAA06 GNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIM
           350       360       370       380       390       400   

        110       120       130       140       150       160      
KIAA00 L-GDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRF
       . :.  .:... : .:   .     .:: :::  ::   . :: . :     :  : .: 
KIAA06 FRGE--VRLNVEE-KKTRAARERETRGGGDDR--RDIRRNDRGPGGPRGIVGGGMMRDRD
             410        420       430         440       450        

        170       180       190       200       210       220      
KIAA00 RDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPREEVVQ
         ::: ::                                                    
KIAA06 GRGPPPRGGMAQKLGSGRGTGQMEGRFTGQRR                            
      460       470       480       490                            




230 residues in 1 query   sequences
1987275 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:33 2008 done: Thu Dec 18 15:05:33 2008
 Total Scan time:  0.280 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]