hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15382662/chunk_1/iprscan-20080501-15382662.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0038
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  70.8    1.7e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/1      45   116 ..     1   121 []    70.8  1.7e-16

Alignments of top-scoring domains:
SM00360: domain 1 of 1, from 45 to 116: score 70.8, E = 1.7e-16
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t +VgNL  p+++ + d+  +F              +    ++svr+
    KIAA0038    45    TAYVGNL--PFNTVQGDIDAIF--------------KDLS-IRSVRL 74   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   vrdkd                     T k kGf++VeF+++++ + A  +
    KIAA0038    75 VRDKD---------------------TDKFKGFCYVEFDEVDSLKEA--L 101  

                   ealnaskGkeledgGrptlglrVe<-*
                     ++   G  l  g+r    lrV+   
    KIAA0038   102 -TYD---GALL--GDRS---LRVD    116  

//