Gene/Protein Characteristic Table for KIAA0043
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Product ID ORK00382
Accession No D26362
Description bromodomain containing 3
Clone name ha01331
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (3028 bp)
Predicted protein sequence (731 aa)
Flexi ORF Clone FXC00382
Source Myeloblast cell line (KG-1)
Features of the cloned cDNA sequence

Length: 3028 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 708 bp
Genome contig ID gi89161216r_135787825
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 9 r 135887825 135922913 12 99.9 Perfect prediction
Features of the protein sequence

Length: 731 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q15059 3.4e-180 100.0 Bromodomain-con...
Homo sapiens
XP_001170299 1.9e-179 99.7 bromodomain con...
Pan troglodytes
XP_001099107 1.1e-178 99.0 similar to brom...
Macaca mulatta
XP_001170278 3.7e-177 98.9 bromodomain con...
Pan troglodytes
XP_001098998 1.3e-176 98.2 similar to brom...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001487 59 72 PR00503 Bromodomain
IPR001487 75 91 PR00503 Bromodomain
IPR001487 91 109 PR00503 Bromodomain
IPR001487 384 403 PR00503 Bromodomain
HMMPfam IPR001487 44 133 PF00439 Bromodomain
IPR001487 320 408 PF00439 Bromodomain
HMMSmart IPR001487 37 147 SM00297 Bromodomain
IPR001487 313 422 SM00297 Bromodomain
ProfileScan IPR001487 56 128 PS50014 Bromodomain
IPR001487 331 403 PS50014 Bromodomain
ScanRegExp IPR001487 61 120 PS00633 Bromodomain
IPR001487 336 395 PS00633 Bromodomain
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 9
Experimental conditions
Panel name Genebridge 4
PCR product length 271 bp
PCR conditions 95 °C15 sec65 °C60 sec30 cycles
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