hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15465348/chunk_1/iprscan-20080501-15465348.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0043 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00439.15.ls Bromodomain 296.1 6e-86 2 PF00439.15.fs Bromodomain 292.2 9.3e-85 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00439.15.fs 1/2 44 133 .. 1 92 [] 154.2 3.2e-43 PF00439.15.ls 1/2 44 133 .. 1 92 [] 156.2 8.1e-44 PF00439.15.fs 2/2 320 408 .. 1 92 [] 138.0 2.3e-38 PF00439.15.ls 2/2 320 408 .. 1 92 [] 139.9 6.2e-39 Alignments of top-scoring domains: PF00439.15.fs: domain 1 of 2, from 44 to 133: score 154.2, E = 3.2e-43 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++++ v++ l++h +a+pf++pV++ kl+lPDY++iIk+PMD++ KIAA0043 44 LQYMQNVVVKTLWKHQ-FAWPFYQPVDAIKLNLPDYHKIIKNPMDMG 89 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIkk+l+n++Y +s+ e+++Dfn mf+N+++YN+p +++ +A+ KIAA0043 90 TIKKRLENNYY-WSASECMQDFNTMFTNCYIYNKPTDDIVLMAQA 133 PF00439.15.ls: domain 1 of 2, from 44 to 133: score 156.2, E = 8.1e-44 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++++ v++ l++h +a+pf++pV++ kl+lPDY++iIk+PMD++ KIAA0043 44 LQYMQNVVVKTLWKHQ-FAWPFYQPVDAIKLNLPDYHKIIKNPMDMG 89 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIkk+l+n++Y +s+ e+++Dfn mf+N+++YN+p +++ +A+ KIAA0043 90 TIKKRLENNYY-WSASECMQDFNTMFTNCYIYNKPTDDIVLMAQA 133 PF00439.15.fs: domain 2 of 2, from 320 to 408: score 138.0, E = 2.3e-38 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk ++++l+ +l + +++ +a+pf++pV++ +lel+DY++iIk+PMDL+ KIAA0043 320 CDSILREMLSK-KHAA-YAWPFYKPVDAEALELHDYHDIIKHPMDLS 364 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* T+k+k++ ++Y +++ F aD++LmfsN+++YN+pd+ev+ +A+k KIAA0043 365 TVKRKMDGREY-PDAQGFAADVRLMFSNCYKYNPPDHEVVAMARK 408 PF00439.15.ls: domain 2 of 2, from 320 to 408: score 139.9, E = 6.2e-39 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk ++++l+ +l + +++ +a+pf++pV++ +lel+DY++iIk+PMDL+ KIAA0043 320 CDSILREMLSK-KHAA-YAWPFYKPVDAEALELHDYHDIIKHPMDLS 364 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* T+k+k++ ++Y +++ F aD++LmfsN+++YN+pd+ev+ +A+k KIAA0043 365 TVKRKMDGREY-PDAQGFAADVRLMFSNCYKYNPPDHEVVAMARK 408 //