Gene/Protein Characteristic Table for KIAA0067
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Product ID ORK00393
Accession No D31891
Description SET domain, bifurcated 1, transcript variant 1
Clone name ha01038
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4333 bp)
Predicted protein sequence (1300 aa)
Flexi ORF Clone FXC00393
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0067 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 4333 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 371 bp
Genome contig ID gi89161185f_149065543
PolyA signal sequence
Flanking genome sequence
(138294 - 138343)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 1 f 149165543 149203835 22 100.0 Perfect prediction
Features of the protein sequence

Length: 1300 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q15047 0 100.0 Histone-lysine ...
Homo sapiens
XP_524864 0 99.5 SET domain, bif...
Pan troglodytes
EAW53505 0 99.8 SET domain, bif...
Homo sapiens
EAW53506 0 99.9 SET domain, bif...
Homo sapiens
AAH28671 0 99.8 SET domain, bif...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001739 603 677 PF01429 Methyl-CpG binding
IPR007728 690 804 PF05033 Pre-SET zinc-binding region
IPR001214 806 1282 PF00856 SET
HMMSmart IPR002999 265 327 SM00333 Tudor
IPR002999 355 410 SM00333 Tudor
IPR001739 606 681 SM00391 Methyl-CpG binding
IPR003606 688 795 SM00468 Pre-SET zinc-binding sub-group
IPR001214 812 1281 SM00317 SET
ProfileScan IPR001739 603 674 PS50982 Methyl-CpG binding
IPR007728 736 809 PS50867 Pre-SET zinc-binding region
IPR001214 811 1279 PS50280 SET
IPR003616 1284 1300 PS50868 Post-SET zinc-binding region
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 1
Experimental conditions
Panel name Genebridge 4
PCR product length 109 (1.4K) bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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