# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01038.fasta.huge -Q ../query/KIAA0067.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0067, 1300 aa
 vs ./tmplib.23147 library

1986205 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.6487+/-0.00852; mu= -7.1609+/- 0.575
 mean_var=462.2027+/-108.614, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.059657

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1876  ( 803 res)   pf01162s1                   ( 803)  281 39.5  0.0027


>>KIAA1876  ( 803 res)   pf01162s1                        (803 aa)
 initn: 261 init1: 221 opt: 281  Z-score: 150.9  bits: 39.5 E(): 0.0027
Smith-Waterman score: 397;  36.264% identity (63.187% similar) in 182 aa overlap (690-868:632-798)

     660       670       680       690       700       710         
KIAA00 DFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTP-PPQVAYSK
                                     ::. : : .:. ::: .:. : : .  : .
KIAA18 SQVWSALQMSKALQDSAPDRPSPVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVS
             610       620       630       640       650       660 

      720       730       740       750       760         770      
KIAA00 ERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATAC--TPGGQINPNSGYQY
       .    . . :. .   :  : : : : ..:.: : ::...   :     :.. :    ..
KIAA18 QNCVTSPMNIDRNITHLQYCVCIDDC-SSSNCMCGQLSMR---CWYDKDGRLLP----EF
             670       680        690       700          710       

        780       790       800       810       820       830      
KIAA00 KRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGS
       .  :   :  ..:::. :.:  : : ::.::.::..::::..:.. :::.: :.::  :.
KIAA18 NMAE---PPLIFECNHACSCWRN-CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGT
              720       730        740       750       760         

        840       850       860       870       880       890      
KIAA00 FVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKD
       ::: :.:....:. ::   ..  : :. .::.                            
KIAA18 FVCEYVGELISDSEAD---VREEDSYLFDLDNKISSA                       
     770       780          790       800                          

        900       910       920       930       940       950      
KIAA00 QEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETTSKDS




1300 residues in 1 query   sequences
1986205 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:36 2008 done: Thu Dec 18 15:06:37 2008
 Total Scan time:  0.790 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]