Gene/Protein Characteristic Table for KIAA0042
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Product ID ORK01049
Accession No D26361
Description kinesin family member 14, transcript variant 1
Clone name ha00930
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (6586 bp)
Predicted protein sequence (1652 aa)
Flexi ORF Clone FXC01049
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0042 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 6586 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1200 bp
Genome contig ID gi89161185r_198687930
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GTGATATTGAGCAGTTCCTAAAGAATAATTCATTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAGAAGAAAAAAAAAGAAGAATTCATTTAAATAACCTGATCCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 198787930 198856485 30 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 1652 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q15058 0 100.0 Kinesin-like pr...
Homo sapiens
AAI13743 0 99.9 Kinesin family ...
Homo sapiens
EAW91317 0 99.9 kinesin family ...
Homo sapiens
XP_001109736 0 93.1 kinesin family ...
Macaca mulatta
XP_547369 0 81.3 similar to Kine...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046810 3.6e-54 40.9 KIAA1590
AB014539 3.7e-48 36.8 KIAA0639
AB014606 1.3e-39 42.1 KIAA0706
AB040881 2.4e-39 36.2 KIAA1448
AB011163 4.5e-38 34.4 KIAA0591
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001752 442 463 PR00380 Kinesin
IPR001752 565 582 PR00380 Kinesin
IPR001752 602 620 PR00380 Kinesin
IPR001752 655 676 PR00380 Kinesin
HMMPfam IPR001752 368 706 PF00225 Kinesin
IPR000253 829 895 PF00498 Forkhead-associated
HMMSmart IPR001752 360 713 SM00129 Kinesin
IPR000253 828 880 SM00240 Forkhead-associated
ProfileScan IPR001752 359 632 PS50067 Kinesin
ScanRegExp IPR001752 601 612 PS00411 Kinesin
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name Stanford G3
Primer_f CCAAAGAAGAACACCAACAAT
Primer_r CACACCCACTGAATCCTACTG
PCR product length 145 bp
PCR conditions 95 °C15 sec60 °C60 sec30 cycles
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