Gene/Protein Characteristic Table for KIAA0041
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Product ID ORK00006
Accession No D26069
Description ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Clone name ha00469s1
Vector information
The cDNA fragment was originally inserted at Apa I-NotI site ...
cDNA sequence DNA sequence (6926 bp)
Predicted protein sequence (781 aa)
Flexi ORF Clone FXC00006
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0041 by Kazusa Mouse cDNA Project
Note We replaced ha00469, former representative clones for KIAA0041 with ha00469s1. (2002/12/27)
Features of the cloned cDNA sequence
Description

Length: 6926 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 4579 bp
Genome contig ID gi89161205r_196376764
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
TTACAATAAGTCAATAAAGATCTCACCTCTGGCTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTTCTTTCATGGTGATTTACATTTTCTTGTGAAATACACTGTGAACATA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 196476764 196644875 23 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 781 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_516962 0 100.0 centaurin, beta...
Pan troglodytes
XP_001093762 0 99.5 centaurin, beta...
Macaca mulatta
Q15057 0 100.0 ARFGAP with coi...
Homo sapiens
AAH60767 0 99.9 Centaurin, beta...
Homo sapiens
Q6IVG4 0 98.1 ARFGAP with coi...
Oryctolagus cun...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051503 1.9e-103 61.0 KIAA1716
D30758 2.8e-80 51.5 KIAA0050
AB007860 3.2e-18 28.4 KIAA0400
AB033075 6.3e-15 30.1 KIAA1249
AB075855 3.2e-14 31.6 KIAA1975
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001164 414 433 PR00405 Arf GTPase activating protein
IPR001164 433 450 PR00405 Arf GTPase activating protein
IPR001164 454 475 PR00405 Arf GTPase activating protein
IPR002110 677 689 PR01415 Ankyrin
IPR002110 689 701 PR01415 Ankyrin
HMMPfam IPR001849 270 364 PF00169 Pleckstrin-like
IPR001164 402 523 PF01412 Arf GTPase activating protein
IPR002110 629 640 PF00023 Ankyrin
IPR002110 643 675 PF00023 Ankyrin
IPR002110 676 708 PF00023 Ankyrin
IPR002110 709 729 PF00023 Ankyrin
HMMSmart IPR001849 270 366 SM00233 Pleckstrin-like
IPR001164 402 523 SM00105 Arf GTPase activating protein
IPR002110 643 672 SM00248 Ankyrin
IPR002110 676 705 SM00248 Ankyrin
IPR002110 709 738 SM00248 Ankyrin
ProfileScan IPR001849 269 364 PS50003 Pleckstrin-like
IPR001164 402 523 PS50115 Arf GTPase activating protein
IPR002110 608 741 PS50297 Ankyrin
IPR002110 643 675 PS50088 Ankyrin
IPR002110 676 708 PS50088 Ankyrin
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name Stanford G3
Primer_f GTTCATAAATGCGGTCGG
Primer_r GGGGAATCAACCCAACAA
PCR product length 206 bp
PCR conditions 95 °C15 sec60 °C60 sec30 cycles
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