Gene/Protein Characteristic Table for KIAA1168
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Product ID ORK00193
Accession No AB032994
Description cytoplasmic FMR1 interacting protein 2, transcript variant 5
Clone name hk07410
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4149 bp)
Predicted protein sequence (1304 aa)
Flexi ORF Clone FXC00193
Source Human adult brain
Rouge ID mKIAA1168 by Kazusa Mouse cDNA Project
Note We replaced hk08280, former representative clones for KIAA1168 with hk07410. (2007/2/9)
Features of the cloned cDNA sequence
Description

Length: 4149 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 233 bp
Genome contig ID gi51511721f_156525728
PolyA signal sequence
(AGTAAA,-10)
+----*----+----*----+----*----+----
GCATAAATGAAAAAAAAAAAAAAAAAGTAAACAGG
Flanking genome sequence
(227093 - 227142)
----+----*----+----*----+----*----+----*----+----*
GCAGTGTGTGCTTTTTCTTTTCTCCCCCCTCAACTATATTAAGAACTCCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 5 f 156625728 156752819 32 99.9 Perfect prediction
Features of the protein sequence
Description

Length: 1304 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001105005 0 99.6 similar to cyto...
Macaca mulatta
XP_536455 0 99.6 similar to p53 ...
Canis lupus fam...
BAG10431 0 100.0 cytoplasmic FMR...
synthetic construct
Q96F07 0 99.9 Cytoplasmic FMR...
Homo sapiens
XP_001136888 0 99.9 cytoplasmic FMR...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D38549 0 85.0 KIAA0068
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR008081 70 87 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 125 141 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 165 194 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 286 301 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 602 625 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 665 683 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 734 756 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 794 824 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 1130 1154 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 1176 1192 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
IPR008081 1251 1265 PR01698 Cytoplasmic fragile X mental retardation protein interacting protein
HMMPfam IPR008081 27 1304 PF05994 Cytoplasmic fragile X mental retardation protein interacting protein
Experimental conditions
Primer_f TCCAGCCTTATTACCTCTATG
Primer_r CACAATCTTTAGCAGTTCCTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 5
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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