# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07410.fasta.huge -Q ../query/KIAA1168.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1168, 1304 aa vs ./tmplib.24314 library 1986201 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.4372+/-0.00486; mu= 14.2304+/- 0.330 mean_var=91.6089+/-21.511, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.134000 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0068 ( 1271 res) ha01025 (1271) 4101 804.0 0 >>KIAA0068 ( 1271 res) ha01025 (1271 aa) initn: 7480 init1: 4101 opt: 4101 Z-score: 4279.2 bits: 804.0 E(): 0 Smith-Waterman score: 7434; 85.031% identity (93.981% similar) in 1296 aa overlap (9-1303:1-1271) 10 20 30 40 50 60 KIAA11 ARGPAVASGPSPGPAAEPVQNTETAAMTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPS : : :: : :...:::::::::::::::::::::::::::::: KIAA00 GNSQGPPRTPKPPRTQPRMAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPS 10 20 30 40 50 70 80 90 100 110 120 KIAA11 SIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIP :..:: ::.:::::::::::::::::::::::::::::::::.::::::::::::::::: KIAA00 SLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIP 60 70 80 90 100 110 130 140 150 160 170 180 KIAA11 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVS :::::::::::::::::::::::::::::.::::::.::::::.::.::::::::::::: KIAA00 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVS 120 130 140 150 160 170 190 200 210 220 230 240 KIAA11 EAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA00 EAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL 180 190 200 210 220 230 250 260 270 280 290 300 KIAA11 ANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLM ::::.::: :.:::::: :::::::::::.:::::::.:::::::::::::::::::::: KIAA00 ANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLM 240 250 260 270 280 290 310 320 330 340 350 360 KIAA11 DGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIETSAHYEENKSKWTC ::.::::::::::::::::::::.:::::::::::::::::::::.::::::::::.::: KIAA00 DGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTC 300 310 320 330 340 350 370 380 390 400 410 KIAA11 TQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSG-LDSQKSDEEYRELFDLA :.:. ::::::::::.:::.::.::::::::::::::::::: ..::.: :::.::::: KIAA00 TSSGSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLA 360 370 380 390 400 410 420 430 440 450 460 470 KIAA11 LRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEV :.::::::.:::::::::::::::::::. ::::: .:::::::::::::::::::.::: KIAA00 LQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSEEKFALVEV 420 430 440 450 460 470 480 490 500 510 520 530 KIAA11 IAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAI :::::::::::::::::::.:::.:.:::::::.:::::::::::..:::::. :::::: KIAA00 IAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAI 480 490 500 510 520 530 540 550 560 570 580 590 KIAA11 RKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQACQWSPRALFHPTGGT :::.:::: :.:: ::: ::::::::.::::::::::::::::: KIAA00 RKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQ---------------- 540 550 560 570 600 610 620 630 640 650 KIAA11 QGRRGCRSLLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNIS ::::::::::::::::::::::::::.:: .: :: ::..:::.:::.:.: KIAA00 ---------LYMVRTMLESLIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFS 580 590 600 610 620 660 670 680 690 700 710 KIAA11 EALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLD :.:::::::::::::::::::::::::::::::::::::::::::::: :::::::: :: KIAA00 ETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLD 630 640 650 660 670 680 720 730 740 750 760 770 KIAA11 LYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRA ::::::.::::.:.::::::::::::::::::::::::::::::::.::::.:::::.:. KIAA00 LYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRS 690 700 710 720 730 740 780 790 800 810 820 830 KIAA11 ECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFES :::: :. : :::::::::::::::::::::::::::::::.::::::::. ::.:::: KIAA00 ECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFES 750 760 770 780 790 800 840 850 860 870 880 890 KIAA11 EDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNF :::::::::. ::::::.::.:: ...:::.::::::::::::::::::::::::::::. KIAA00 EDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNY 810 820 830 840 850 860 900 910 920 930 940 950 KIAA11 DFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFV ::::::::::::::::::..::.:: :::: :.:: ::.::: ::.::: ::.:::::: KIAA00 DFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFV 870 880 890 900 910 920 960 970 980 990 1000 1010 KIAA11 GPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGS :::::..:::::::::::::::::::.::::::::::::::::.:::::::::::::::: KIAA00 GPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGS 930 940 950 960 970 980 1020 1030 1040 1050 1060 1070 KIAA11 PGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQ ::::::::::::::.::::::: ::.::::::::::::::::.:: ::::::::::::: KIAA00 PGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQ 990 1000 1010 1020 1030 1040 1080 1090 1100 1110 1120 1130 KIAA11 NILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCG ::::::..::::::...:::::.::::::::::::::::::::::::::::::::::::: KIAA00 NILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCG 1050 1060 1070 1080 1090 1100 1140 1150 1160 1170 1180 1190 KIAA11 LSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTA :::::::::::::.:.::::::: :.:::::::::::::::::::::::::::::.:::. KIAA00 LSMFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTV 1110 1120 1130 1140 1150 1160 1200 1210 1220 1230 1240 1250 KIAA11 EQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIR ::::::::.:::: ::::::::::: ..::::::::::..:::::::::::::::..::: KIAA00 EQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIR 1170 1180 1190 1200 1210 1220 1260 1270 1280 1290 1300 KIAA11 KYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC :.::::.:...::.::.:: . ... ::::::::::::::::.. KIAA00 KFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS 1230 1240 1250 1260 1270 1304 residues in 1 query sequences 1986201 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:45 2008 done: Thu Dec 18 15:11:45 2008 Total Scan time: 0.740 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]