Gene/Protein Characteristic Table for KIAA0434
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Product ID ORK04290
Accession No AB007894
Description bassoon presynaptic cytomatrix protein
Clone name hh02165
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5650 bp)
Predicted protein sequence (1571 aa)
Source Human adult brain
Rouge ID mKIAA0434 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5650 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 933 bp
Genome contig ID gi89161205f_49569058
PolyA signal sequence
(CATAAA,-27)
+----*----+----*----+----*----+----
GTATACCTCATAAACATTTTTCTTTTGTTTCTCTC
Flanking genome sequence
(111799 - 111848)
----+----*----+----*----+----*----+----*----+----*
TCCCCCTTTCTCTCTTCTCTTGGCTCACTCCCTTGCCTCTCCCCCTCCAC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 f 49669058 49680855 8 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1571 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAA77176 0 100.0 Bassoon protein...
Homo sapiens
Q9UPA5 0 100.0 Protein bassoon...
Homo sapiens
NP_003449 0 99.9 bassoon protein...
Homo sapiens
AAC83555 0 99.9 neuronal double...
Homo sapiens
XP_516463 0 99.2 bassoon protein...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB011131 1.7e-10 32.9 KIAA0559
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR008165 1454 1495 PD003992 Protein of unknown function GLTT
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f CATCACAGGAGGAGAGGCAGC
Primer_r TTCCCGCTCTAGCTCCTCTTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name GeneBridge 4
Primer_f ACGCTGCTTTTCGGTGCTATG
Primer_r CCGTTTCCTTCACATTCCAGC
PCR product length 187 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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