Gene/Protein Characteristic Table for KIAA0340
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Product ID ORK06655
Accession No AB002338
Description regulating synaptic membrane exocytosis 1
Clone name hg01396
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6395 bp)
Predicted protein sequence (1053 aa)
Source Human adult brain
Rouge ID mKIAA0340 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 6395 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3231 bp
Genome contig ID gi89161210f_72553371
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CTAGATAACAAGAGTGAGACTCTGTCTCAAAAAAG
Flanking genome sequence
(490642 - 490691)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAGAATATTTTCTAGAAATTGAGGAAATTTAAAACATTGATGAAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 f 72653371 73044011 21 99.1 Perfect prediction
Features of the protein sequence
Description

Length: 1053 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAB87121 0 100.0 RIM short form ...
Homo sapiens
BAB87242 0 100.0 RIM long form [...
Homo sapiens
AAY96658 0 99.1 regulating syna...
Macaca mulatta
AAY96657 0 99.0 regulating syna...
Macaca mulatta
AAB66703 0 88.7 rab3 effector [...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB018294 2.6e-58 56.0 KIAA0751
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR000008 788 800 PR00360 C2 calcium-dependent membrane targeting
IPR000008 817 830 PR00360 C2 calcium-dependent membrane targeting
IPR000008 842 850 PR00360 C2 calcium-dependent membrane targeting
HMMPfam IPR001478 619 702 PF00595 PDZ/DHR/GLGF
IPR000008 773 864 PF00168 C2 calcium-dependent membrane targeting
HMMSmart IPR001478 628 707 SM00228 PDZ/DHR/GLGF
IPR000008 772 879 SM00239 C2 calcium-dependent membrane targeting
ProfileScan IPR010911 47 207 PS50916 Rab-binding
IPR000306 135 195 PS50178 Zinc finger
IPR001478 619 705 PS50106 PDZ/DHR/GLGF
IPR000008 769 864 PS50004 C2 calcium-dependent membrane targeting
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f CGACAATAAGATAGGGAGTGG
Primer_r CTCATGTTGTCTCTATCTCCA
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name GeneBridge 4
Primer_f TTAGTAGAGACGGGGTTTCAC
Primer_r AGGAGTTGAAAAGAAGAGTCG
PCR product length 170 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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