hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00141321/chunk_1/iprscan-20080502-00141321.nocrc
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Query sequence: KIAA0340
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  84.1    1.7e-20   1
SM00228                                                  67.3    1.9e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1     628   707 ..     1    80 []    67.3  1.9e-15
SM00239    1/1     772   879 ..     1    92 []    84.1  1.7e-20

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 628 to 707: score 67.3, E = 1.9e-15
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      + lG+ +vg++ ++ ++ g+f+++v++Gs A+  G     +L++GD+
    KIAA0340   628    ALLGLKVVGgkmtdlgrlGAFITKVKKGSLADVVG-----HLRAGDE 669  

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +le+NG +++ g+t ee+ +++ +++    + +v+++v R+    
    KIAA0340   670 VLEWNG-KPLPGATNEEVYNIILESKS---EPQVEIIVSRPI    707  

SM00239: domain 1 of 1, from 772 to 879: score 84.1, E = 1.7e-20
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +L v++++A +Lp + ++++++PYVk++  ++++++++++Tk+vkk 
    KIAA0340   772    QLIVNVLQATDLParvdgrprNPYVKMYflpdrsdkskrRTKTVKKI 818  

                   lsgfNPvWnEesetFeFevpp......s.LeieVyDk........dfiGr
                   l    P+Wn+   tF+++ +++++ +++ Lei+V+D ++  +++++f+G+
    KIAA0340   819 L---EPKWNQ---TFVYSHVHrrdfreRmLEITVWDQprvqeeesEFLGE 862  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   + i               l++ l  ++++++   
    KIAA0340   863 ILIE--------------LETALlDDEPhWY    879  

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