Gene/Protein Characteristic Table for KIAA0260
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Product ID ORK01063
Accession No D87449
Description solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1
Clone name ha07062
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (5918 bp)
Predicted protein sequence (383 aa)
Flexi ORF Clone FXC01063
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0260 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5918 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 4764 bp
Genome contig ID gi89161185r_67137653
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TTTTTGTAATGGTGTAAAATAAATACTTTTTCCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAACAAGTATTAAAATTCCTTTGTAACTGCATACAGAGACTAATCCAGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 67237653 67292370 13 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 383 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001151573 8.7e-150 99.7 solute carrier ...
Pan troglodytes
Q9NTN3 3.3e-139 100.0 UDP-glucuronic ...
Homo sapiens
Q5RDC9 7.1e-139 99.7 UDP-N-acetylglu...
Pongo abelii
XP_001093420 1.7e-138 99.4 similar to solu...
Macaca mulatta
A2VE55 5.3e-136 97.5 UDP-N-acetylglu...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004853 189 357 PF03151 Protein of unknown function DUF250

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 64 TLTVFLKLLAAGFYGVSSFLIVV 86 SECONDARY 23
2 99 SSLCVGLGQMVATVAVLWVGKAL 121 PRIMARY 23
3 137 TFPLPLLYFGNQITGLFST 155 SECONDARY 19
4 159 NLPMFTVLRRFSILFTMFAEGVL 181 SECONDARY 23
5 186 FSWGIKMTVFAMIIGAFVAASSD 208 PRIMARY 23
6 212 DLEGYAFILINDVLTAANGAYVK 234 SECONDARY 23
7 245 YGLLYYNALFMILPTLAIAYFTG 267 SECONDARY 23
8 281 TLFLLQFTLSCVMGFILMYATVL 303 PRIMARY 23
9 311 LTTTIVGCIKNILITYIGMVFGG 333 SECONDARY 23
10 340 TNFIGLNISIAGSLVYSYITFTE 362 SECONDARY 23
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name Genebridge 4
Primer_f TTGAAAGCACTTGACCCCATG
Primer_r CATCTTGAAAGTAAGACCTAG
PCR product length 121 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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