ROUGE

Gene/Protein Characteristic Table for mKIAA0260

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220330
Description :	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1.
Clone Name :	mfj33008 [Vector Info]
Source :	Mouse fetal brain

Features of the cloned DNA sequence	Description

Length: 4016 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3020 bp

Genome contig ID gi65493515r_102029559
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TTTTTTTAATGATGTCAAATAAATACTTTTTCTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATGTGTGTTAGAATTCCTTCCTCCTGTGTCGTGAGCATTGAGAGATA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0260 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0260	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..996
Length: 331 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAM25523	1.1e-133	100.0	solute carrier ...	Mus musculus
BAC33758	5.2e-133	99.7	unnamed protein...	Mus musculus
BAE41358	4.6e-131	100.0	unnamed protein...	Mus musculus
XP_001093420	5.7e-131	98.2	similar to solu...	Macaca mulatta
Q5RDC9	1.1e-130	97.9	UDP-N-acetylglu...	Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 16 38 FLKLLAAGFYGVSSFLIVVVNKS

45 67 FPSSLCVGLGQMVATVAVLWVGK

89 111 PLLYFGNQITGLFSTKKLNLPMF

136 157 WGIKMTVFAMIIGAFVAASSDL

159 181 FDLEGYVFILINDVLTAANGAYV

193 215 YGLLYYNALFMILPTLAIAYFTG

228 250 DTLFLLQFTLSCVMGFILMYATV

259 281 LTTTIVGCIKNILITYIGMVFGG

288 310 TNFIGLNISIAGSLVYSYITFTE

Method	From	To	amino acid sequence
SOSUI	16	38	FLKLLAAGFYGVSSFLIVVVNKS
45	67	FPSSLCVGLGQMVATVAVLWVGK
89	111	PLLYFGNQITGLFSTKKLNLPMF
136	157	WGIKMTVFAMIIGAFVAASSDL
159	181	FDLEGYVFILINDVLTAANGAYV
193	215	YGLLYYNALFMILPTLAIAYFTG
228	250	DTLFLLQFTLSCVMGFILMYATV
259	281	LTTTIVGCIKNILITYIGMVFGG
288	310	TNFIGLNISIAGSLVYSYITFTE

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3020 bp
Genome contig ID	gi65493515r_102029559
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TTTTTTTAATGATGTCAAATAAATACTTTTTCTGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAATGTGTGTTAGAATTCCTTCCTCCTGTGTCGTGAGCATTGAGAGATA

Gene/Protein Characteristic Table for mKIAA0260

Features of the cloned DNA sequence

Features of the protein sequence