Gene/Protein Characteristic Table for KIAA0159
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Product ID ORK00032
Accession No D63880
Description non-SMC condensin I complex, subunit D2
Clone name ha03574
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (5547 bp)
Predicted protein sequence (1406 aa)
Flexi ORF Clone FXC00032
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0159 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5547 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 542 bp
Genome contig ID gi89161190f_6372806
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
TGTTTTCTAATGAATAAATGTTTTTATATACTTTT
Flanking genome sequence
(138577 - 138626)
----+----*----+----*----+----*----+----*----+----*
AGACATTTTTTCCTAAGCTTGTCTTTGTTTCATCTTTCACATTAGCCCAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 12 f 6472806 6511381 32 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 1406 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG11144 0 100.0 condensin compl...
synthetic construct
EAW88788 0 99.9 chromosome cond...
Homo sapiens
Q15021 0 99.8 Condensin compl...
Homo sapiens
NP_055680 0 99.8 non-SMC condens...
Homo sapiens
XP_001161617 0 99.6 chromosome cond...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D29954 1.1e-05 22.8 KIAA0056
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000357 364 400 PF02985 HEAT
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 12
Experimental conditions
Panel name Stanford G3
Primer_f GACTCGTCGCTAAGATTCCCC
Primer_r CAACCTTCATTTCCTTCACGG
PCR product length 96 bp
PCR conditions 95 °C15 sec62 °C120 sec30 cycles
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