# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha03574.fasta.huge -Q ../query/KIAA0159.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0159, 1406 aa
 vs ./tmplib.23147 library

1986099 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.0364+/-0.00508; mu= 11.4912+/- 0.345
 mean_var=113.5954+/-26.040, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.120336

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0056  ( 1507 res)   ha01062                    (1507)  209 48.5 1.1e-05


>>KIAA0056  ( 1507 res)   ha01062                         (1507 aa)
 initn: 230 init1: 155 opt: 209  Z-score: 193.9  bits: 48.5 E(): 1.1e-05
Smith-Waterman score: 209;  22.814% identity (57.414% similar) in 263 aa overlap (1038-1294:928-1185)

      1010      1020      1030      1040      1050      1060       
KIAA01 ELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTI
                                     . : : ..:::.:.    .  ...  :   
KIAA00 ADHSPSSQGSSEAPASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRE
       900       910       920       930       940       950       

      1070      1080      1090      1100      1110      1120       
KIAA01 LEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILK
       ::      ::.:....  :: ::.  .:: . :..   :.:    .:: . ...:.:. .
KIAA00 LEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQE
       960       970       980       990      1000      1010       

      1130       1140      1150      1160        1170      1180    
KIAA01 DMVKVKGQVS-EMAVLLIDPEPQIAALAKNFFNELSHKGNAI--YNLLPDIISRLSDPEL
       ..:: ::..  ...  ::: .:.::....  . .:  : : .  .. . . : .... : 
KIAA00 EFVKWKGSLFFRFVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEK
      1020      1030      1040      1050      1060      1070       

         1190      1200      1210      1220      1230        1240  
KIAA01 GVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSLTERQQRDLA--YCVSQLPLTE
         . . :    ..   .  : :...    :. . .   .:..:. ...   :.: :    
KIAA00 HEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFA
      1080      1090      1100      1110      1120      1130       

            1250      1260      1270      1280      1290      1300 
KIAA01 RGLRKM-LDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRG
        :.  . ::  . ..: .  : . :  ..... .:  .::.   ...: .. :       
KIAA00 DGILPLDLDASELLSDTF--EVLSSKEIKLLA-MR--SKPDKDLLMEEDDMALANVVMQE
      1140      1150        1160         1170      1180      1190  

            1310      1320      1330      1340      1350      1360 
KIAA01 LDGIKELEIGQAGSQRAPSAKKPSTGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRA
                                                                   
KIAA00 AQKKLISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFA
           1200      1210      1220      1230      1240      1250  




1406 residues in 1 query   sequences
1986099 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:47 2008 done: Thu Dec 18 15:09:48 2008
 Total Scan time:  0.810 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]