Gene/Protein Characteristic Table for KIAA0080
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Product ID ORK00398
Accession No D38522
Description synaptotagmin XI
Clone name hh13320
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5974 bp)
Predicted protein sequence (486 aa)
Flexi ORF Clone FXC00398
Source Human adult brain
Rouge ID mKIAA0080 by Kazusa Mouse cDNA Project
Note We replaced ha00491, former representative clones for KIAA0080 with hh13320. (2003/2/13)
Features of the cloned cDNA sequence
Description

Length: 5974 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Features of the protein sequence
Description

Length: 486 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001113446 1.3e-206 98.6 synaptotagmin 1...
Macaca mulatta
AAH04291 5.9e-185 100.0 Synaptotagmin X...
Homo sapiens
Q9BT88 2.4e-184 99.8 Synaptotagmin-1...
Homo sapiens
BAB55186 3.3e-184 99.5 unnamed protein...
Homo sapiens
AAH39205 3.8e-184 99.8 Synaptotagmin X...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB037763 3.1e-76 53.0 KIAA1342
AB037848 1.4e-17 25.9 KIAA1427
AB023202 1.4e-10 29.1 KIAA0985
AB007899 1.9e-05 26.8 KIAA0439
AB033054 2.5e-05 35.0 KIAA1228
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001565 216 231 PR00399 Synaptotagmin
IPR001565 231 244 PR00399 Synaptotagmin
IPR001565 288 303 PR00399 Synaptotagmin
IPR001565 308 318 PR00399 Synaptotagmin
IPR000008 379 391 PR00360 C2 calcium-dependent membrane targeting
IPR000008 408 421 PR00360 C2 calcium-dependent membrane targeting
IPR000008 432 440 PR00360 C2 calcium-dependent membrane targeting
HMMPfam IPR000008 229 317 PF00168 C2 calcium-dependent membrane targeting
IPR000008 363 452 PF00168 C2 calcium-dependent membrane targeting
HMMSmart IPR000008 228 332 SM00239 C2 calcium-dependent membrane targeting
IPR000008 362 478 SM00239 C2 calcium-dependent membrane targeting
ProfileScan IPR000008 229 317 PS50004 C2 calcium-dependent membrane targeting
IPR000008 359 452 PS50004 C2 calcium-dependent membrane targeting

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 71 VVAGLIGASVLVVCVSVTVFVWS 93 PRIMARY 23
Expression profile
Description

Northern blot
RT-PCR-ELISA
Experimental conditions
Primer_f
Primer_r
PCR conditions test
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