ROUGE

Gene/Protein Characteristic Table for mKIAA4246

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	BC032882
Description :	Interferon-induced guanylate-binding protein 2.
Clone Name :	msj08227 [Vector Info]
Source :	Mouse adult spleen

Features of the cloned DNA sequence	Description

Length: 2449 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 520 bp

Genome contig ID gi65492966f_141492643
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
AGAGCACAAGTTAATAAAAATGATTAGCCCACTGT
Flanking genome sequence
(114340 - 114389)
----+----*----+----*----+----*----+----*----+----*
AATTGTTTCTGAATGTGTATTATCATTTGTGGTTCACTAAGGAAACAAAA

Genomic structure deduced by Blast search against draft genome sequences

Features of the protein sequence	Description

Coding region: 121..1926
Length: 602 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH32882	2.5e-196	100.0	Gbp2 protein [M...	Mus musculus
Q9Z0E6	2.8e-196	99.8	Interferon-indu...	Mus musculus
AAD39746	4e-196	99.7	guanylate bindi...	Mus musculus
AAH11336	4e-196	99.8	Gbp2 protein [M...	Mus musculus
AAA19909	1.3e-178	89.5	ORF.	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK131176	3.8e-69	52.1	mFLJ00316
AK220567	2e-58	48.9	mKIAA4245

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003191 31 293 PF02263 Guanylate-binding protein

IPR003191 295 591 PF02841 Guanylate-binding protein

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003191	31	293	PF02263	Guanylate-binding protein
IPR003191	295	591	PF02841	Guanylate-binding protein

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 41 63 LRILSAITQPVVVVAIVGLYRTG

127 149 WIFALAVLLSSTFIYNSIGTINQ

Method	From	To	amino acid sequence
SOSUI	41	63	LRILSAITQPVVVVAIVGLYRTG
127	149	WIFALAVLLSSTFIYNSIGTINQ

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	520 bp
Genome contig ID	gi65492966f_141492643
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- AGAGCACAAGTTAATAAAAATGATTAGCCCACTGT
Flanking genome sequence (114340 - 114389)	----+--------+--------+--------+--------+----* AATTGTTTCTGAATGTGTATTATCATTTGTGGTTCACTAAGGAAACAAAA

Gene/Protein Characteristic Table for mKIAA4246

Features of the cloned DNA sequence

Features of the protein sequence