ROUGE

Gene/Protein Characteristic Table for mKIAA4076

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220474
Description :	plasticity related gene 2.
Clone Name :	mbh01667 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 2842 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 74 bp

Genome contig ID gi65524842r_79887418
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TGTCTACAGCCCCACCAATAAAAACTTATGCTATT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACGTGGTCTGGAATTTTTTTTAAGATTTAATGTGAGTACACCATAGCTGT

Genomic structure deduced by Blast search against draft genome sequences

Features of the protein sequence	Description

Coding region: 951..2765
Length: 605 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH66006	7.5e-190	100.0	CDNA sequence B...	Mus musculus
Q7TPB0	1.5e-189	99.8	Lipid phosphate...	Mus musculus
Q7TMB0	5.6e-184	96.9	Lipid phosphate...	Rattus norvegicus
AAI67750	3.7e-183	96.6	Plasticity-rela...	Rattus norvegicus
EDL31639	5.7e-161	100.0	cDNA sequence B...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK129149	2.1e-37	43.4	mKIAA0455
AK220568	1.6e-09	38.0	mKIAA4247

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000326 20 173 PF01569 Phosphoesterase

HMMSmart IPR000326 21 165 SM00014 Phosphoesterase

ProfileScan IPR000326 87 159 PS50226 Phosphoesterase

NULL 324 347 PS50313 NULL

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000326	20	173	PF01569	Phosphoesterase
HMMSmart	IPR000326	21	165	SM00014	Phosphoesterase
ProfileScan	IPR000326	87	159	PS50226	Phosphoesterase
NULL	324	347	PS50313	NULL

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 20 42 SSGVHVFGLCATALVTDVIQLAT

46 68 TPFFLTVCKPNYTLLGTSCESNP

93 115 QHATLSAFAAVYVSMYFNAVISD

118 140 KLLKPILVFAFAIAAGVCGLTQI

149 171 DVYAGFLIGAGIAAYLACHAVGN

Method	From	To	amino acid sequence
SOSUI	20	42	SSGVHVFGLCATALVTDVIQLAT
46	68	TPFFLTVCKPNYTLLGTSCESNP
93	115	QHATLSAFAAVYVSMYFNAVISD
118	140	KLLKPILVFAFAIAAGVCGLTQI
149	171	DVYAGFLIGAGIAAYLACHAVGN

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	74 bp
Genome contig ID	gi65524842r_79887418
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TGTCTACAGCCCCACCAATAAAAACTTATGCTATT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACGTGGTCTGGAATTTTTTTTAAGATTTAATGTGAGTACACCATAGCTGT

Gene/Protein Characteristic Table for mKIAA4076

Features of the cloned DNA sequence

Features of the protein sequence