FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4076.ptfa, 605 aa vs ./tmplib.26680 library 1768412 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.0684+/-0.00794; mu= -2.2615+/- 0.525 mean_var=311.4573+/-76.685, 0's: 0 Z-trim: 6 B-trim: 151 in 1/35 Lambda= 0.0727 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0455 ( 795 res) mbg13653 ( 795) 1318 152 2.1e-37 mKIAA4247 ( 326 res) mfj16277 ( 326) 427 58 1.6e-09 >>mKIAA0455 ( 795 res) mbg13653 (795 aa) initn: 1307 init1: 744 opt: 1318 Z-score: 763.8 bits: 151.8 E(): 2.1e-37 Smith-Waterman score: 1441; 43.372% identity (47.406% ungapped) in 611 aa overlap (22-605:210-795) 10 20 30 40 50 mKIAA4 TGLGEHPSPLLPSPGLALSSSGVHVFGLCATALVTDVIQLATGYHTPFFLT ::::::::.:::.::.:::.:::..:.::: mKIAA0 KRRNGAGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLT 180 190 200 210 220 230 60 70 80 90 100 110 mKIAA4 VCKPNYTLLGTSCESNPYITQDICSGHDTHAILSARKTFPSQHATLSAFAAVYVSMYFNA ::::::: :..::. : ::..::::: : .: :.::.::::::::.::::::::::::. mKIAA0 VCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYVSMYFNS 240 250 260 270 280 290 120 130 140 150 160 170 mKIAA4 VISDTTKLLKPILVFAFAIAAGVCGLTQITQYRSHPVDVYAGFLIGAGIAAYLACHAVGN ...:..:::::.:::.: : . .::::.::::..:::::: :::::.::: ::. .:::: mKIAA0 TLTDSSKLLKPLLVFTFIICGIICGLTRITQYKNHPVDVYCGFLIGGGIALYLGLYAVGN 300 310 320 330 340 350 180 190 200 210 220 mKIAA4 FQAPPAEKVPTPAPAKDALRALTQRGHESMYQQNKSVSTDELGPPG----RLEGVPRPVA : :.: . .::::.::. . :. . : . . : : . ::. mKIAA0 FL--PSED--SMLQHRDALRSLTD-----LNQDPSRVLSAKNGSSGDGIAHTEGILNRNH 360 370 380 390 400 410 230 240 250 260 270 280 mKIAA4 REKTSLGSLKRASVDVDLLAPRSPMGKEGMVTFSNTLPRVSTPSLDDPARRHMTIHVPLD :. .:: .::::..::....::::::::.::::::::::..:::..::.::. .::. .: mKIAA0 RDASSLTNLKRANADVEIITPRSPMGKESMVTFSNTLPRANTPSVEDPVRRNASIHASMD 420 430 440 450 460 470 290 300 310 320 330 340 mKIAA4 ASRSRQLIGEWKQKSLEGRGLGLPDEASPVHLRAPAEQVAEEEEEEEEE---EEEEEEEE ..::.::. .::.:. :.: ..: . . ..: ... . : . . ... mKIAA0 SARSKQLLTQWKSKN-ESRKMSLQVMDTEPEGQSPPRSIEMRSSSEPSRVGVNGDHHVPG 480 490 500 510 520 350 360 370 380 390 400 mKIAA4 EEEGPVPPSLYPTVQ-ARPGLGPRVILPPRPGPQPLVHIPEEGVQAGAGLSPKSSSSSVR .. . :. : . . :: :::: . ::: . ::::::: .: . . ::::::. : mKIAA0 NQYLKIQPGTVPGCNNSMPG-GPRVSIQSRPGSSQLVHIPEE-TQENISTSPKSSSA--R 530 540 550 560 570 580 410 420 430 440 450 mKIAA4 AKWLSMAEKGGGPVAVAPSQPRVANPPRLLQVIAMSKAAG----GPKAETASSSSASSDS ::::. ::: :: : : ::..::::::: : .:: .:. . .. : mKIAA0 AKWLKAAEK---TVACN----RSNNQPRIMQVIAMSKQQGVLQSSPKNAEGSTVTCTG-S 590 600 610 620 630 460 470 480 490 500 510 mKIAA4 SQYRSPSDRDSASIVTIDAHAPHH-PVVHLSA-----GSTPWEWKAKVVEG-EGSYELGD .:.. .:.. ..:: ..:: .. :.... . :: :.::: . . .:::.: mKIAA0 IRYKTLTDHEPSGIVRVEAHPENNRPIIQIPSSTEGEGSGSWKWKAPEKSSLRQTYELND 640 650 660 670 680 690 520 530 540 550 560 mKIAA4 LARGFRSSCK--QPGMGPGS-PVSDVDQEEPRFGAVATVNLATGEGLPPPGASEGALGAG : : ::. . ..: :. :..:..: . ...:. .. :: .:: .. mKIAA0 LNRD-SESCESLKDSFGSGDRKRSNIDSNEHHHHGITTIRVTPVEG--SEIGSETLSVSS 700 710 720 730 740 750 570 580 590 600 mKIAA4 SRESTLRRQ--VGGLAEREVEAEAES--YYR-RMQARRYQD ::.:::::. . . :: : .:. .: :.: mKIAA0 SRDSTLRRKGNIILIPERSNSPENTRNIFYKGTSPTRAYKD 760 770 780 790 >>mKIAA4247 ( 326 res) mfj16277 (326 aa) initn: 275 init1: 275 opt: 427 Z-score: 263.5 bits: 57.9 E(): 1.6e-09 Smith-Waterman score: 427; 38.000% identity (40.426% ungapped) in 200 aa overlap (22-213:130-325) 10 20 30 40 50 mKIAA4 TGLGEHPSPLLPSPGLALSSSGVHVFGLCATALVTDVIQLATGYHTPFFLT :: .::: :: . ... :..::. ::.::: mKIAA4 RESLIAEEKMILTGDCCYLSPLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLT 100 110 120 130 140 150 60 70 80 90 100 mKIAA4 VCKPNYTLLGTSCESNP-YITQ-DICSGHDTHAILSARKTFPSQHATLSAFAAVYVSMYF ::.:::: .:.:... .:.. .::.: : ..: .::..:::.::.:: ..:.:..::. mKIAA4 VCQPNYT--STDCRAHQQFINNGNICTG-DLEVIEKARRSFPSKHAALSIYSALYATMYI 160 170 180 190 200 210 110 120 130 140 150 160 mKIAA4 NAVI-SDTTKLLKPILVFAFAIAAGVCGLTQITQYRSHPVDVYAGFLIGAGIAAYLACHA ...: . ...: ::.: .. .: . ::.....::.: :: :::..:...: .:. . mKIAA4 TSTIKTKSSRLAKPVLCLGTLCTAFLTGLNRVSEYRNHCSDVIAGFILGTAVALFLGMCV 220 230 240 250 260 270 170 180 190 200 210 220 mKIAA4 VGNF---QAPPAEKVPTPAPAKDALRALT--QRGHESMYQQNKSVSTDELGPPGRLEGVP : :: :. :.. : : : :. . :.. ::.:.: :. mKIAA4 VHNFRGTQGSPSKPKPED-PRGVPLMAFPRIESPLETLSAQNHSASMTEVT 280 290 300 310 320 230 240 250 260 270 280 mKIAA4 RPVAREKTSLGSLKRASVDVDLLAPRSPMGKEGMVTFSNTLPRVSTPSLDDPARRHMTIH 605 residues in 1 query sequences 1768412 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:01:08 2006 done: Mon Mar 27 11:01:09 2006 Scan time: 0.810 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]