ROUGE

Gene/Protein Characteristic Table for mKIAA1885

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173288
Description :	valyl-tRNA synthetase 2-like.
Clone Name :	meh00658 [Vector Info]
Source :	Mouse embryonic intestinal tract

Features of the cloned DNA sequence	Description

Length: 4985 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1885 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1885	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 22..2832, 3640..4089
Length: 1086 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAC87668	97.9	unnamed protein...	Mus musculus
Q3U2A8	97.6	Valyl-tRNA synt...	Mus musculus
NP_780346	97.3	valyl-tRNA synt...	Mus musculus
XP_001790318	83.4	valyl-tRNA synt...	Bos taurus
BAG65557	81.9	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR002303 162 173 PR00986 Valyl-tRNA synthetase

IPR002303 374 391 PR00986 Valyl-tRNA synthetase

IPR002303 490 503 PR00986 Valyl-tRNA synthetase

IPR002303 603 624 PR00986 Valyl-tRNA synthetase

IPR002303 634 652 PR00986 Valyl-tRNA synthetase

HMMPfam IPR002300 135 759 PF00133 Aminoacyl-tRNA synthetase

NULL 803 959 PF08264 NULL

HMMTigr IPR002303 123 1067 TIGR00422 Valyl-tRNA synthetase

ProfileScan IPR001440 1050 1083 PS50005 TPR repeat

ScanRegExp IPR001412 169 180 PS00178 Aminoacyl-tRNA synthetase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002303	162	173	PR00986	Valyl-tRNA synthetase
IPR002303	374	391	PR00986	Valyl-tRNA synthetase
IPR002303	490	503	PR00986	Valyl-tRNA synthetase
IPR002303	603	624	PR00986	Valyl-tRNA synthetase
IPR002303	634	652	PR00986	Valyl-tRNA synthetase
HMMPfam	IPR002300	135	759	PF00133	Aminoacyl-tRNA synthetase
NULL	803	959	PF08264	NULL
HMMTigr	IPR002303	123	1067	TIGR00422	Valyl-tRNA synthetase
ProfileScan	IPR001440	1050	1083	PS50005	TPR repeat
ScanRegExp	IPR001412	169	180	PS00178	Aminoacyl-tRNA synthetase

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Gene/Protein Characteristic Table for mKIAA1885

Features of the cloned DNA sequence

Features of the protein sequence