ROUGE

Gene/Protein Characteristic Table for mKIAA1815

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129447
Description :	BA207C16.3.
Clone Name :	mpm09063 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 5011 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2321 bp

Genome contig ID gi65553144r_28762794
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
TGTTACTGAAATAAACTTTTTAACACACTGGTTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAATGGATCTTTTACAACTGCTTTTTATTCTATCTCCATATTTTAAG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1815 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1815	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 3..2690
Length: 895 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q3UVK0	100.0	Endoplasmic ret...	Mus musculus
EDL41688	100.0	mCG124990, isof...	Mus musculus
BAE23269	99.9	unnamed protein...	Mus musculus
Q6UPR8	95.3	Endoplasmic ret...	Rattus norvegicus
Q7Z2K6	85.3	Endoplasmic ret...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007484 189 360 PF04389 Peptidase M28

IPR002933 192 368 PF01546 Peptidase M20

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007484	189	360	PF04389	Peptidase M28
IPR002933	192	368	PF01546	Peptidase M20

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 388 403 GSMVFFDVLGLLVIAY

409 424 SIINYMVVMAVVLYLG

444 466 GLGITFISWFTSLVTVLIIAVFI

479 501 FYIAVCLYGTATVAKIIFIHTLA

513 535 YLGELFFDTSLFVHCAFLVALTY

539 561 CSAFMSAVWVVFPLLTKLCVYKD

573 595 ALYLLGMFIPYLYGLYLIWAVFE

609 631 PPDVVLASILAVCVMILSSYFIT

643 665 ILTLILVCAVTFLLVCSGAFFPY

Method	From	To	amino acid sequence
SOSUI	388	403	GSMVFFDVLGLLVIAY
409	424	SIINYMVVMAVVLYLG
444	466	GLGITFISWFTSLVTVLIIAVFI
479	501	FYIAVCLYGTATVAKIIFIHTLA
513	535	YLGELFFDTSLFVHCAFLVALTY
539	561	CSAFMSAVWVVFPLLTKLCVYKD
573	595	ALYLLGMFIPYLYGLYLIWAVFE
609	631	PPDVVLASILAVCVMILSSYFIT
643	665	ILTLILVCAVTFLLVCSGAFFPY

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2321 bp
Genome contig ID	gi65553144r_28762794
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- TGTTACTGAAATAAACTTTTTAACACACTGGTTGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAATGGATCTTTTACAACTGCTTTTTATTCTATCTCCATATTTTAAG

Gene/Protein Characteristic Table for mKIAA1815

Features of the cloned DNA sequence

Features of the protein sequence