ROUGE

Gene/Protein Characteristic Table for mKIAA1810

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122558
Description :	HRD1 protein. synoviolin 1.
Clone Name :	mbh02539 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 3917 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1992 bp

Genome contig ID gi65553144f_5735852
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TTGTATATACAGCTCAATAAAAACTTGCATTAATG
Flanking genome sequence
(106652 - 106701)
----+----*----+----*----+----*----+----*----+----*
ATTGGTAGAACGTGTCACCTAGGGTAGGGCTGGGCTCTTAGTCTACAGAC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1810 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1810	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 44..550, 1221..1817, 2085..2684
Length: 568 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW74361	3.8e-110	88.6	synovial apopto...	Homo sapiens
Q9DBY1	1.4e-102	85.6	E3 ubiquitin-pr...	Mus musculus
EDL33196	1.4e-102	85.8	synovial apopto...	Mus musculus
BAB23474	2e-102	85.5	unnamed protein...	Mus musculus
AAI66727	3.3e-99	83.8	Syvn1 protein [...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001841 283 321 PF00097 Zinc finger

HMMSmart IPR001841 283 321 SM00184 Zinc finger

ProfileScan IPR001841 283 322 PS50089 Zinc finger

IPR000694 331 464 PS50099 Proline-rich region

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001841	283	321	PF00097	Zinc finger
HMMSmart	IPR001841	283	321	SM00184	Zinc finger
ProfileScan	IPR001841	283	322	PS50089	Zinc finger
IPR000694	331	464	PS50099	Proline-rich region

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 16 38 FRTAVMMAASLALTGAVVAHAYY

54 76 SPSMAVLYIQAFVLVFLLGKVMG

142 164 FSPRFVALFTLLLFLKCFHWLAE

168 190 DFYAILMTMVLTIFIKYVLHSVD

211 233 TGFIKVLLYMAFMTIMIKVHTFP

Method	From	To	amino acid sequence
SOSUI	16	38	FRTAVMMAASLALTGAVVAHAYY
54	76	SPSMAVLYIQAFVLVFLLGKVMG
142	164	FSPRFVALFTLLLFLKCFHWLAE
168	190	DFYAILMTMVLTIFIKYVLHSVD
211	233	TGFIKVLLYMAFMTIMIKVHTFP

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	1992 bp
Genome contig ID	gi65553144f_5735852
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TTGTATATACAGCTCAATAAAAACTTGCATTAATG
Flanking genome sequence (106652 - 106701)	----+--------+--------+--------+--------+----* ATTGGTAGAACGTGTCACCTAGGGTAGGGCTGGGCTCTTAGTCTACAGAC

Gene/Protein Characteristic Table for mKIAA1810

Features of the cloned DNA sequence

Features of the protein sequence