Gene/Protein Characteristic Table for KIAA1810
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Product ID ORK00924
Accession No AB058713
Description synovial apoptosis inhibitor 1, synoviolin
Clone name fk03376
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (2841 bp)
Predicted protein sequence (579 aa)
Flexi ORF Clone FXC00924
Source Human fetal brain
Rouge ID mKIAA1810 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 2841 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1101 bp
Genome contig ID gi51511727r_64551329
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
ATTGTATATACAGCCAAATAAAAACTTGCATTAAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATTGGTGGGGTTTGTGTCACAGAATCGATCAAATCAGTGTCGGGCTCCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 11 r 64651329 64658527 14 99.6 Perfect prediction
Features of the protein sequence
Description

Length: 579 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW74361 5.2e-143 100.0 synovial apopto...
Homo sapiens
AAL26903 8.4e-111 91.7 HRD1 [Homo sapi...
Homo sapiens
CAD38937 8.4e-111 91.7 hypothetical pr...
Homo sapiens
Q86TM6 2.5e-110 91.6 E3 ubiquitin-pr...
Homo sapiens
ABZ92145 3.2e-110 91.4 synovial apopto...
synthetic construct
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan NULL 302 323 PR01217 NULL
NULL 323 339 PR01217 NULL
NULL 348 365 PR01217 NULL
NULL 419 444 PR01217 NULL
HMMPfam IPR001841 254 292 PF00097 Zinc finger
HMMSmart IPR001841 254 292 SM00184 Zinc finger
ProfileScan IPR001841 254 293 PS50089 Zinc finger

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 16 FRTAVMMAASLALTGAVVAHAYY 38 PRIMARY 23
2 54 SPSMAVLYIQAFVLVFLLGKVMG 76 PRIMARY 23
3 139 DFYAILMTMVLTIFIKYVLHSVD 161 SECONDARY 23
4 182 TGFIKVLLYMAFMTIMIKVHTFP 204 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CCTTCCTCTCCAACTCTTCAG
Primer_r TGGGAACGGGAGCTAATACTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 11
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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