ROUGE

Gene/Protein Characteristic Table for mKIAA1431

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173170
Description :	Zinc finger protein 28.
Clone Name :	mfj27243 [Vector Info]
Source :	Mouse fetal brain

Features of the cloned DNA sequence	Description

Length: 4386 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1867 bp

Genome contig ID gi65511124f_5479116
PolyA signal sequence
(ATTAAA,-19)
+----*----+----*----+----*----+----
CCTCCCAAGTACTGTGATTAAAGGTATGCACCACC
Flanking genome sequence
(113572 - 113621)
----+----*----+----*----+----*----+----*----+----*
AGGCATGGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1431 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1431	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 18..2519
Length: 833 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
P10078	100.0	Zinc finger pro...	Mus musculus
BAC33362	99.9	unnamed protein...	Mus musculus
AAS99100	99.9	ZFP28 [Mus musc...	Mus musculus
XP_577757	86.1	similar to zinc...	Rattus norvegicus
EDL83179	86.1	rCG32043 [Rattu...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK173216	3.8e-73	58.7	mKIAA1611
AK173278	5.6e-70	39.5	mKIAA1852
AK173164	3.9e-66	54.2	mKIAA1396
AK220404	4.4e-66	46.9	mKIAA1559
AK220562	1.1e-65	38.0	mKIAA4236

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR007087 413 436 PD000003 Zinc finger

IPR007087 441 465 PD000003 Zinc finger

IPR007087 638 661 PD000003 Zinc finger

IPR007087 666 689 PD000003 Zinc finger

IPR007087 750 773 PD000003 Zinc finger

FPrintScan IPR007086 637 650 PR00048 Zinc finger

IPR007086 765 774 PR00048 Zinc finger

HMMPfam IPR001909 111 151 PF01352 KRAB box

IPR001909 244 275 PF01352 KRAB box

IPR007087 385 407 PF00096 Zinc finger

IPR007087 413 435 PF00096 Zinc finger

IPR007087 441 464 PF00096 Zinc finger

IPR007087 470 492 PF00096 Zinc finger

IPR007087 498 520 PF00096 Zinc finger

IPR007087 526 548 PF00096 Zinc finger

IPR007087 554 576 PF00096 Zinc finger

IPR007087 582 604 PF00096 Zinc finger

IPR007087 610 632 PF00096 Zinc finger

IPR007087 638 660 PF00096 Zinc finger

IPR007087 666 688 PF00096 Zinc finger

IPR007087 694 716 PF00096 Zinc finger

IPR007087 722 744 PF00096 Zinc finger

IPR007087 750 772 PF00096 Zinc finger

HMMSmart IPR001909 111 171 SM00349 KRAB box

IPR007087 385 407 SM00355 Zinc finger

IPR007087 413 435 SM00355 Zinc finger

IPR007087 441 464 SM00355 Zinc finger

IPR007087 470 492 SM00355 Zinc finger

IPR007087 498 520 SM00355 Zinc finger

IPR007087 526 548 SM00355 Zinc finger

IPR007087 554 576 SM00355 Zinc finger

IPR007087 582 604 SM00355 Zinc finger

IPR007087 610 632 SM00355 Zinc finger

IPR007087 638 660 SM00355 Zinc finger

IPR007087 666 688 SM00355 Zinc finger

IPR007087 694 716 SM00355 Zinc finger

IPR007087 722 744 SM00355 Zinc finger

IPR007087 750 772 SM00355 Zinc finger

ProfileScan IPR001909 111 182 PS50805 KRAB box

IPR007087 385 412 PS50157 Zinc finger

IPR007087 413 440 PS50157 Zinc finger

IPR007087 441 469 PS50157 Zinc finger

IPR007087 470 497 PS50157 Zinc finger

IPR007087 498 525 PS50157 Zinc finger

IPR007087 526 553 PS50157 Zinc finger

IPR007087 554 581 PS50157 Zinc finger

IPR007087 582 609 PS50157 Zinc finger

IPR007087 610 637 PS50157 Zinc finger

IPR007087 638 665 PS50157 Zinc finger

IPR007087 666 693 PS50157 Zinc finger

IPR007087 694 721 PS50157 Zinc finger

IPR007087 722 749 PS50157 Zinc finger

IPR007087 750 777 PS50157 Zinc finger

ScanRegExp IPR007087 387 407 PS00028 Zinc finger

IPR007087 415 435 PS00028 Zinc finger

IPR007087 443 464 PS00028 Zinc finger

IPR007087 472 492 PS00028 Zinc finger

IPR007087 500 520 PS00028 Zinc finger

IPR007087 528 548 PS00028 Zinc finger

IPR007087 556 576 PS00028 Zinc finger

IPR007087 584 604 PS00028 Zinc finger

IPR007087 612 632 PS00028 Zinc finger

IPR007087 640 660 PS00028 Zinc finger

IPR007087 668 688 PS00028 Zinc finger

IPR007087 696 716 PS00028 Zinc finger

IPR007087 724 744 PS00028 Zinc finger

IPR007087 752 772 PS00028 Zinc finger

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR007087	413	436	PD000003	Zinc finger
IPR007087	441	465	PD000003	Zinc finger
IPR007087	638	661	PD000003	Zinc finger
IPR007087	666	689	PD000003	Zinc finger
IPR007087	750	773	PD000003	Zinc finger
FPrintScan	IPR007086	637	650	PR00048	Zinc finger
IPR007086	765	774	PR00048	Zinc finger
HMMPfam	IPR001909	111	151	PF01352	KRAB box
IPR001909	244	275	PF01352	KRAB box
IPR007087	385	407	PF00096	Zinc finger
IPR007087	413	435	PF00096	Zinc finger
IPR007087	441	464	PF00096	Zinc finger
IPR007087	470	492	PF00096	Zinc finger
IPR007087	498	520	PF00096	Zinc finger
IPR007087	526	548	PF00096	Zinc finger
IPR007087	554	576	PF00096	Zinc finger
IPR007087	582	604	PF00096	Zinc finger
IPR007087	610	632	PF00096	Zinc finger
IPR007087	638	660	PF00096	Zinc finger
IPR007087	666	688	PF00096	Zinc finger
IPR007087	694	716	PF00096	Zinc finger
IPR007087	722	744	PF00096	Zinc finger
IPR007087	750	772	PF00096	Zinc finger
HMMSmart	IPR001909	111	171	SM00349	KRAB box
IPR007087	385	407	SM00355	Zinc finger
IPR007087	413	435	SM00355	Zinc finger
IPR007087	441	464	SM00355	Zinc finger
IPR007087	470	492	SM00355	Zinc finger
IPR007087	498	520	SM00355	Zinc finger
IPR007087	526	548	SM00355	Zinc finger
IPR007087	554	576	SM00355	Zinc finger
IPR007087	582	604	SM00355	Zinc finger
IPR007087	610	632	SM00355	Zinc finger
IPR007087	638	660	SM00355	Zinc finger
IPR007087	666	688	SM00355	Zinc finger
IPR007087	694	716	SM00355	Zinc finger
IPR007087	722	744	SM00355	Zinc finger
IPR007087	750	772	SM00355	Zinc finger
ProfileScan	IPR001909	111	182	PS50805	KRAB box
IPR007087	385	412	PS50157	Zinc finger
IPR007087	413	440	PS50157	Zinc finger
IPR007087	441	469	PS50157	Zinc finger
IPR007087	470	497	PS50157	Zinc finger
IPR007087	498	525	PS50157	Zinc finger
IPR007087	526	553	PS50157	Zinc finger
IPR007087	554	581	PS50157	Zinc finger
IPR007087	582	609	PS50157	Zinc finger
IPR007087	610	637	PS50157	Zinc finger
IPR007087	638	665	PS50157	Zinc finger
IPR007087	666	693	PS50157	Zinc finger
IPR007087	694	721	PS50157	Zinc finger
IPR007087	722	749	PS50157	Zinc finger
IPR007087	750	777	PS50157	Zinc finger
ScanRegExp	IPR007087	387	407	PS00028	Zinc finger
IPR007087	415	435	PS00028	Zinc finger
IPR007087	443	464	PS00028	Zinc finger
IPR007087	472	492	PS00028	Zinc finger
IPR007087	500	520	PS00028	Zinc finger
IPR007087	528	548	PS00028	Zinc finger
IPR007087	556	576	PS00028	Zinc finger
IPR007087	584	604	PS00028	Zinc finger
IPR007087	612	632	PS00028	Zinc finger
IPR007087	640	660	PS00028	Zinc finger
IPR007087	668	688	PS00028	Zinc finger
IPR007087	696	716	PS00028	Zinc finger
IPR007087	724	744	PS00028	Zinc finger
IPR007087	752	772	PS00028	Zinc finger

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1867 bp
Genome contig ID	gi65511124f_5479116
PolyA signal sequence (ATTAAA,-19)	+--------+--------+----*----+---- CCTCCCAAGTACTGTGATTAAAGGTATGCACCACC
Flanking genome sequence (113572 - 113621)	----+--------+--------+--------+--------+----* AGGCATGGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGA

Gene/Protein Characteristic Table for mKIAA1431

Features of the cloned DNA sequence

Features of the protein sequence