ROUGE

Gene/Protein Characteristic Table for mKIAA1329

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AB093294
Description :	VPS10 domain-containing receptor SorCS2 precursor.
Clone Name :	mbg00105 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5704 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2145 bp

Genome contig ID gi65498774r_34404696
PolyA signal sequence
(AATAAA,-33)
+----*----+----*----+----*----+----
ACAATAAATCATTTGTGATGCTTTTAACAAAGGTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATCAACAGGGTCGGTCTCTGCCTTAGTGTGAAGATCTGCTTTATGCTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1329 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1329	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..3559
Length: 1185 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EDL37502	99.9	sortilin-relate...	Mus musculus
Q9EPR5	99.8	VPS10 domain-co...	Mus musculus
NP_001100695	96.6	VPS10 domain re...	Rattus norvegicus
EDM00049	96.8	sortilin-relate...	Rattus norvegicus
EAW82363	85.9	sortilin-relate...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002860 208 219 PF02012 Glycosyl hydrolase

IPR002860 258 269 PF02012 Glycosyl hydrolase

IPR002860 299 310 PF02012 Glycosyl hydrolase

IPR002860 494 505 PF02012 Glycosyl hydrolase

IPR002860 571 582 PF02012 Glycosyl hydrolase

IPR002860 613 624 PF02012 Glycosyl hydrolase

IPR000601 813 895 PF00801 PKD

ProfileScan IPR000601 842 902 PS50093 PKD

ScanRegExp IPR001304 710 734 PS00615 C-type lectin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002860	208	219	PF02012	Glycosyl hydrolase
IPR002860	258	269	PF02012	Glycosyl hydrolase
IPR002860	299	310	PF02012	Glycosyl hydrolase
IPR002860	494	505	PF02012	Glycosyl hydrolase
IPR002860	571	582	PF02012	Glycosyl hydrolase
IPR002860	613	624	PF02012	Glycosyl hydrolase
IPR000601	813	895	PF00801	PKD
ProfileScan	IPR000601	842	902	PS50093	PKD
ScanRegExp	IPR001304	710	734	PS00615	C-type lectin

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 55 77 CWPRSWPLLLLLLVLVAACGAMG

1107 1127 WAVVVLFVIGLFAVGAFILYK

Method	From	To	amino acid sequence
SOSUI	55	77	CWPRSWPLLLLLLVLVAACGAMG
1107	1127	WAVVVLFVIGLFAVGAFILYK

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2145 bp
Genome contig ID	gi65498774r_34404696
PolyA signal sequence (AATAAA,-33)	+--------+--------+----*----+---- ACAATAAATCATTTGTGATGCTTTTAACAAAGGTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATCAACAGGGTCGGTCTCTGCCTTAGTGTGAAGATCTGCTTTATGCTT

Gene/Protein Characteristic Table for mKIAA1329

Features of the cloned DNA sequence

Features of the protein sequence