ROUGE

Gene/Protein Characteristic Table for mKIAA1244

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122475
Description :
Clone Name :	mbg08203 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 6576 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1568 bp

Genome contig ID gi65524842r_18412485
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATCAGAGCAAGGCTCTTTGGCGTATGTGGGAAGTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAAAAAGTCCCCATTATTCAGCACATTGCCT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1244 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1244	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..5008
Length: 1668 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q3UGY8	100.0	Brefeldin A-inh...	Mus musculus
XP_218665	97.9	similar to CG59...	Rattus norvegicus
XP_001095348	93.3	similar to CG59...	Macaca mulatta
XP_518767	93.0	hypothetical pr...	Pan troglodytes
AAL04174	92.9	BIG3 [Homo sapi...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMSmart IPR000904 80 292 SM00222 SEC7-like

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR000904	80	292	SM00222	SEC7-like

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 837 859 IQVFANAATSYIMCLMKFVKGLG

940 962 DTGLIEVWIILLEQLTAAVSNCP

985 1006 GPGFGIYAVVHLLLPVMSLWLL

1063 1085 VVCVAKPTETISRVGCSCIRYVL

Method	From	To	amino acid sequence
SOSUI	837	859	IQVFANAATSYIMCLMKFVKGLG
940	962	DTGLIEVWIILLEQLTAAVSNCP
985	1006	GPGFGIYAVVHLLLPVMSLWLL
1063	1085	VVCVAKPTETISRVGCSCIRYVL

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1568 bp
Genome contig ID	gi65524842r_18412485
PolyA signal sequence (None)	+--------+--------+----*----+---- ATCAGAGCAAGGCTCTTTGGCGTATGTGGGAAGTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAAAAAGTCCCCATTATTCAGCACATTGCCT

Gene/Protein Characteristic Table for mKIAA1244

Features of the cloned DNA sequence

Features of the protein sequence