ROUGE

Gene/Protein Characteristic Table for mKIAA0853

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	BC082576
Description :
Clone Name :	mbp17194 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 370 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 76 bp

Genome contig ID gi65540054f_69582133
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GTGCATAATCTTTCTTGACGTTCTTTGGTTTGAAG
Flanking genome sequence
(104492 - 104541)
----+----*----+----*----+----*----+----*----+----*
ACATTGCTAACTACAGAGGCAGAGGAGTCACCAGCCACATCAGCAGTGAA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0853 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0853	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..291
Length: 97 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH23707	4.9e-41	100.0	Zc3h13 protein ...	Mus musculus
EDL35830	8.3e-41	100.0	mCG119432 [Mus ...	Mus musculus
NP_080359	1.3e-40	100.0	RIKEN cDNA 3110...	Mus musculus
AAI38265	1.3e-40	100.0	Zinc finger CCC...	Mus musculus
XP_573801	6.5e-38	92.8	similar to RIKE...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	76 bp
Genome contig ID	gi65540054f_69582133
PolyA signal sequence (None)	+--------+--------+----*----+---- GTGCATAATCTTTCTTGACGTTCTTTGGTTTGAAG
Flanking genome sequence (104492 - 104541)	----+--------+--------+--------+--------+----* ACATTGCTAACTACAGAGGCAGAGGAGTCACCAGCCACATCAGCAGTGAA

Gene/Protein Characteristic Table for mKIAA0853

Features of the cloned DNA sequence

Features of the protein sequence