# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbp17194.fasta.nr -Q ../query/mKIAA0853.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0853, 97 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921460 sequences Expectation_n fit: rho(ln(x))= 4.1744+/-0.000176; mu= 8.2769+/- 0.010 mean_var=52.7326+/-10.241, 0's: 39 Z-trim: 40 B-trim: 0 in 0/66 Lambda= 0.176618 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|23271723|gb|AAH23707.1| Zc3h13 protein [Mus mus ( 451) 646 172.2 4.9e-41 gi|148703883|gb|EDL35830.1| mCG119432 [Mus musculu ( 932) 646 172.5 8.3e-41 gi|61742810|ref|NP_080359.2| RIKEN cDNA 3110050K21 (1729) 646 172.8 1.3e-40 gi|223461012|gb|AAI38265.1| Zinc finger CCCH type (1730) 646 172.8 1.3e-40 gi|109501796|ref|XP_573801.2| PREDICTED: similar t ( 539) 606 162.1 6.5e-38 gi|149049968|gb|EDM02292.1| rCG37038 [Rattus norve ( 558) 606 162.1 6.7e-38 gi|109502566|ref|XP_001064314.1| PREDICTED: simila ( 594) 606 162.2 7e-38 gi|109502725|ref|XP_001072035.1| PREDICTED: simila (1727) 606 162.6 1.5e-37 gi|109501760|ref|XP_224295.4| PREDICTED: similar t (1728) 606 162.6 1.5e-37 gi|193786004|dbj|BAG50980.1| unnamed protein produ ( 253) 573 153.4 1.3e-35 gi|109120663|ref|XP_001097211.1| PREDICTED: zinc f (1696) 578 155.4 2.1e-35 gi|193786707|dbj|BAG52030.1| unnamed protein produ ( 624) 573 153.8 2.5e-35 gi|68052314|sp|Q5T200.1|ZC3HD_HUMAN RecName: Full= (1668) 573 154.1 5.1e-35 gi|149635930|ref|XP_001514344.1| PREDICTED: simila (1592) 554 149.3 1.4e-33 gi|76631359|ref|XP_612879.2| PREDICTED: zinc finge (1652) 547 147.5 5e-33 gi|126337731|ref|XP_001370189.1| PREDICTED: simila (1589) 533 143.9 5.8e-32 gi|224043401|ref|XP_002198580.1| PREDICTED: zinc f (1584) 482 130.9 4.7e-28 gi|156230497|gb|AAI51944.1| LOC560041 protein [Dan ( 320) 372 102.3 3.9e-20 gi|169153845|emb|CAQ15405.1| novel protein (zgc:66 (1759) 374 103.5 9.7e-20 gi|47226837|emb|CAG06679.1| unnamed protein produc ( 933) 307 86.1 8.4e-15 gi|210120814|gb|EEA68530.1| hypothetical protein B (1736) 219 64.0 7.5e-08 gi|156224464|gb|EDO45290.1| predicted protein [Nem (1520) 195 57.8 4.7e-06 gi|210084913|gb|EEA33411.1| hypothetical protein B (1706) 164 49.9 0.0012 >>gi|23271723|gb|AAH23707.1| Zc3h13 protein [Mus musculu (451 aa) initn: 646 init1: 646 opt: 646 Z-score: 893.1 bits: 172.2 E(): 4.9e-41 Smith-Waterman score: 646; 100.000% identity (100.000% similar) in 97 aa overlap (1-97:355-451) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|232 FTKVKETCQQLVEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 330 340 350 360 370 380 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI 390 400 410 420 430 440 mKIAA0 QQELCVS ::::::: gi|232 QQELCVS 450 >>gi|148703883|gb|EDL35830.1| mCG119432 [Mus musculus] (932 aa) initn: 646 init1: 646 opt: 646 Z-score: 888.9 bits: 172.5 E(): 8.3e-41 Smith-Waterman score: 646; 100.000% identity (100.000% similar) in 97 aa overlap (1-97:836-932) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|148 FTKVKETCQQLVEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 810 820 830 840 850 860 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI 870 880 890 900 910 920 mKIAA0 QQELCVS ::::::: gi|148 QQELCVS 930 >>gi|61742810|ref|NP_080359.2| RIKEN cDNA 3110050K21 [Mu (1729 aa) initn: 646 init1: 646 opt: 646 Z-score: 885.3 bits: 172.8 E(): 1.3e-40 Smith-Waterman score: 646; 100.000% identity (100.000% similar) in 97 aa overlap (1-97:1633-1729) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|617 FTKVKETCQQLVEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 1610 1620 1630 1640 1650 1660 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|617 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI 1670 1680 1690 1700 1710 1720 mKIAA0 QQELCVS ::::::: gi|617 QQELCVS >>gi|223461012|gb|AAI38265.1| Zinc finger CCCH type cont (1730 aa) initn: 646 init1: 646 opt: 646 Z-score: 885.3 bits: 172.8 E(): 1.3e-40 Smith-Waterman score: 646; 100.000% identity (100.000% similar) in 97 aa overlap (1-97:1634-1730) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|223 FTKVKETCQQLVEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 1610 1620 1630 1640 1650 1660 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI 1670 1680 1690 1700 1710 1720 mKIAA0 QQELCVS ::::::: gi|223 QQELCVS 1730 >>gi|109501796|ref|XP_573801.2| PREDICTED: similar to RI (539 aa) initn: 606 init1: 606 opt: 606 Z-score: 837.0 bits: 162.1 E(): 6.5e-38 Smith-Waterman score: 606; 92.784% identity (98.969% similar) in 97 aa overlap (1-97:443-539) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|109 FTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 420 430 440 450 460 470 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::.:.:..::.:::::::::::.::: gi|109 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSG 480 490 500 510 520 530 mKIAA0 QQELCVS ::::::: gi|109 QQELCVS >>gi|149049968|gb|EDM02292.1| rCG37038 [Rattus norvegicu (558 aa) initn: 606 init1: 606 opt: 606 Z-score: 836.8 bits: 162.1 E(): 6.7e-38 Smith-Waterman score: 606; 92.784% identity (98.969% similar) in 97 aa overlap (1-97:462-558) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|149 FTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 440 450 460 470 480 490 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::.:.:..::.:::::::::::.::: gi|149 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSG 500 510 520 530 540 550 mKIAA0 QQELCVS ::::::: gi|149 QQELCVS >>gi|109502566|ref|XP_001064314.1| PREDICTED: similar to (594 aa) initn: 606 init1: 606 opt: 606 Z-score: 836.4 bits: 162.2 E(): 7e-38 Smith-Waterman score: 606; 92.784% identity (98.969% similar) in 97 aa overlap (1-97:498-594) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|109 FTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::.:.:..::.:::::::::::.::: gi|109 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSG 530 540 550 560 570 580 mKIAA0 QQELCVS ::::::: gi|109 QQELCVS 590 >>gi|109502725|ref|XP_001072035.1| PREDICTED: similar to (1727 aa) initn: 606 init1: 606 opt: 606 Z-score: 830.3 bits: 162.6 E(): 1.5e-37 Smith-Waterman score: 606; 92.784% identity (98.969% similar) in 97 aa overlap (1-97:1631-1727) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|109 FTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 1610 1620 1630 1640 1650 1660 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::.:.:..::.:::::::::::.::: gi|109 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSG 1670 1680 1690 1700 1710 1720 mKIAA0 QQELCVS ::::::: gi|109 QQELCVS >>gi|109501760|ref|XP_224295.4| PREDICTED: similar to RI (1728 aa) initn: 606 init1: 606 opt: 606 Z-score: 830.3 bits: 162.6 E(): 1.5e-37 Smith-Waterman score: 606; 92.784% identity (98.969% similar) in 97 aa overlap (1-97:1632-1728) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::::::::::::::::: gi|109 FTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDS 1610 1620 1630 1640 1650 1660 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::::::::::::::::::::::::.:.:..::.:::::::::::.::: gi|109 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSG 1670 1680 1690 1700 1710 1720 mKIAA0 QQELCVS ::::::: gi|109 QQELCVS >>gi|193786004|dbj|BAG50980.1| unnamed protein product [ (253 aa) initn: 573 init1: 573 opt: 573 Z-score: 795.9 bits: 153.4 E(): 1.3e-35 Smith-Waterman score: 573; 88.660% identity (97.938% similar) in 97 aa overlap (1-97:157-253) 10 20 30 mKIAA0 MAALLRKEERASLLSDLGPCCKALCFRRDS :::::::::::::::.:::::::::::::: gi|193 FAKVKETCQRLLEKPKDADNLFEHELGALNMAALLRKEERASLLSNLGPCCKALCFRRDS 130 140 150 160 170 180 40 50 60 70 80 90 mKIAA0 AIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSI :::::::::::::.:::::..::::::::::::::::.:.::::::.:::::.::. :: gi|193 AIRKQLVKNEKGTIKQAYTSAPMVDNELLRLSLRLFKRKTTCHAPGHEKTEDNKLSQSSI 190 200 210 220 230 240 mKIAA0 QQELCVS ::::::: gi|193 QQELCVS 250 97 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 18:46:44 2009 done: Mon Mar 16 18:50:20 2009 Total Scan time: 498.390 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]