ROUGE

Gene/Protein Characteristic Table for mKIAA0792

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173027
Description :
Clone Name :	mid01072 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 3231 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 767 bp

Genome contig ID gi65488608f_180800385
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
GAACCATTAATAAAGTACCCACTGGGCTGGTGGTG
Flanking genome sequence
(128541 - 128590)
----+----*----+----*----+----*----+----*----+----*
AGACCCTGCCTCTCATGCTTCTTCCGGGTTTATGTACAGATTTTCCACGT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0792 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0792	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..2464
Length: 820 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EDL13138	100.0	transmembrane p...	Mus musculus
Q91YT8	100.0	Transmembrane p...	Mus musculus
EDL13139	99.0	transmembrane p...	Mus musculus
BAE41880	99.9	unnamed protein...	Mus musculus
NP_001127968	95.6	transmembrane p...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003864 350 784 PF02714 Protein of unknown function DUF221

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003864	350	784	PF02714	Protein of unknown function DUF221

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 62 84 TFGGIPTVLLLDVSCFLFLILVF

160 182 HIIFLLVVISFLSLCVILPVNLS

206 228 DLLWLHTVFSVIYLFLTVGFMWH

437 459 WLGINFSLFVVLFFLTTPSIIMS

481 503 FFPTLLLWSFSALLPSIVYYSTL

521 543 VYIFLIFMVLILPSLGLTSLDFF

577 599 ASAFIGSGMELLRLPGLILYTFR

629 651 MLCVFTVIMAYSITCPIIVPFGL

680 702 FAAVNQALAAPILCLFWLFFFSF

713 735 LFTFLVVLLTILACLLYTCFGCF

Method	From	To	amino acid sequence
SOSUI	62	84	TFGGIPTVLLLDVSCFLFLILVF
160	182	HIIFLLVVISFLSLCVILPVNLS
206	228	DLLWLHTVFSVIYLFLTVGFMWH
437	459	WLGINFSLFVVLFFLTTPSIIMS
481	503	FFPTLLLWSFSALLPSIVYYSTL
521	543	VYIFLIFMVLILPSLGLTSLDFF
577	599	ASAFIGSGMELLRLPGLILYTFR
629	651	MLCVFTVIMAYSITCPIIVPFGL
680	702	FAAVNQALAAPILCLFWLFFFSF
713	735	LFTFLVVLLTILACLLYTCFGCF

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	767 bp
Genome contig ID	gi65488608f_180800385
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- GAACCATTAATAAAGTACCCACTGGGCTGGTGGTG
Flanking genome sequence (128541 - 128590)	----+--------+--------+--------+--------+----* AGACCCTGCCTCTCATGCTTCTTCCGGGTTTATGTACAGATTTTCCACGT

Gene/Protein Characteristic Table for mKIAA0792

Features of the cloned DNA sequence

Features of the protein sequence