ROUGE

Gene/Protein Characteristic Table for mKIAA0624

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK172984
Description :	synaptotagmin-like homologue lacking C2 domains b.
Clone Name :	mib05001 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 6166 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1294 bp

Genome contig ID gi65519420f_53337893
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
CACTTGCTGGGAAATAAAGTGGACATTTTAAAGTC
Flanking genome sequence
(106167 - 106216)
----+----*----+----*----+----*----+----*----+----*
TTTGTTGTCTGTAATTGCATTTCTATATGAGCAGAAATCTTTGCATGCTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0624 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0624	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..4872
Length: 1623 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q0VAV2	0	99.9	Exophilin-5; Sy...	Mus musculus
BAC57424	0	99.9	synaptotagmin-l...	Mus musculus
BAE25642	0	100.0	unnamed protein...	Mus musculus
XP_236272	0	79.5	similar to syna...	Rattus norvegicus
XP_508743	8.3e-187	53.2	exophilin 5 iso...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1294 bp
Genome contig ID	gi65519420f_53337893
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- CACTTGCTGGGAAATAAAGTGGACATTTTAAAGTC
Flanking genome sequence (106167 - 106216)	----+--------+--------+--------+--------+----* TTTGTTGTCTGTAATTGCATTTCTATATGAGCAGAAATCTTTGCATGCTT

Gene/Protein Characteristic Table for mKIAA0624

Features of the cloned DNA sequence

Features of the protein sequence