ROUGE

Gene/Protein Characteristic Table for mKIAA0286

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129110
Description :
Clone Name :	mpf00806 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 5998 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4654 bp

Genome contig ID gi65524842f_127313779
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
AAATAATCCCCACTTTAATAAAGTTTTATACAATT
Flanking genome sequence
(123981 - 124030)
----+----*----+----*----+----*----+----*----+----*
TATAGTAGTCTTTTTAAATTAAAGTATTTTAATGTGTGTGTGTTCATGGT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0286 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0286	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..1344
Length: 447 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q6ZQE4	4.8e-184	100.0	Transmembrane p...	Mus musculus
EDM16455	4.1e-167	92.9	rCG59551 [Rattu...	Rattus norvegicus
BAE21451	1.8e-159	99.5	unnamed protein...	Mus musculus
XP_001099369	1.1e-153	82.4	hypothetical pr...	Macaca mulatta
Q5RDB4	2.4e-152	83.6	Transmembrane p...	Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 40 61 WLLLVVAGCVVCGSADVNVVML

167 189 FDPKLFLVFLLGLTLFFCGDLLS

198 220 TGMSVGIVASLLIVIFMISKFMP

225 247 IYVILVGGWSFSLYLIQLVFKNL

255 276 WHYLLSYILTVGFMSFAVCYKY

284 306 SINLLTWTLQLLGLGLMYSSIQI

311 333 FALIVIALCTKNLEYPIHWLCST

Method	From	To	amino acid sequence
SOSUI	40	61	WLLLVVAGCVVCGSADVNVVML
167	189	FDPKLFLVFLLGLTLFFCGDLLS
198	220	TGMSVGIVASLLIVIFMISKFMP
225	247	IYVILVGGWSFSLYLIQLVFKNL
255	276	WHYLLSYILTVGFMSFAVCYKY
284	306	SINLLTWTLQLLGLGLMYSSIQI
311	333	FALIVIALCTKNLEYPIHWLCST

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4654 bp
Genome contig ID	gi65524842f_127313779
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- AAATAATCCCCACTTTAATAAAGTTTTATACAATT
Flanking genome sequence (123981 - 124030)	----+--------+--------+--------+--------+----* TATAGTAGTCTTTTTAAATTAAAGTATTTTAATGTGTGTGTGTTCATGGT

Gene/Protein Characteristic Table for mKIAA0286

Features of the cloned DNA sequence

Features of the protein sequence