ROUGE

Gene/Protein Characteristic Table for mKIAA0245

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129099
Description :	solute carriersolute carrier family 7 (cationic amino acid transporter, y+ system), member 6.
Clone Name :	mpm02214 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 4289 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1229 bp

Genome contig ID gi65515060f_105386026
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
ATAAAATAAATCTTTGGATTTTTGGTATGAACTGC
Flanking genome sequence
(107845 - 107894)
----+----*----+----*----+----*----+----*----+----*
AAGAGGCCTGGAATGTTCTACATAAGGTGTTATGCAAAATTCAGGTAGAT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0245 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0245	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2002..3060
Length: 352 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAE33971	1e-120	99.0	unnamed protein...	Mus musculus
Q8BGK6	1e-120	99.0	Y+L amino acid ...	Mus musculus
BAE38304	1e-120	99.0	unnamed protein...	Mus musculus
EDL92441	1.8e-119	97.4	solute carrier ...	Rattus norvegicus
NP_001069405	5.3e-112	91.1	solute carrier ...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK173217	9e-05	21.8	mKIAA1613

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

ProfileScan NULL 3 43 PS50314 NULL

IPR002293 73 246 PS50285 Amino acid/polyamine transporter I

Search method	interpro_ID	From	To	Entry	Definition
ProfileScan	NULL	3	43	PS50314	NULL
IPR002293	73	246	PS50285	Amino acid/polyamine transporter I

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 12 34 LSLFFFLLLFHLFNSPSVFFLFF

73 95 LSLALYSALFSYSGWDTLNFVTE

114 136 IVTLIYILTNVAYYTVLNIQDVH

157 179 IPIAVALSCFGGLNASIFASSRL

201 223 FTPVPALLFNCTMTLIYLVVKDV

227 249 INYFSFSYWFFVGLSVVGQLYLR

259 281 LKLSLFFPIVFCVCSLFLVAVPL

288 309 SLIGIGIALSGVPVYFLGVYLP

Method	From	To	amino acid sequence
SOSUI	12	34	LSLFFFLLLFHLFNSPSVFFLFF
73	95	LSLALYSALFSYSGWDTLNFVTE
114	136	IVTLIYILTNVAYYTVLNIQDVH
157	179	IPIAVALSCFGGLNASIFASSRL
201	223	FTPVPALLFNCTMTLIYLVVKDV
227	249	INYFSFSYWFFVGLSVVGQLYLR
259	281	LKLSLFFPIVFCVCSLFLVAVPL
288	309	SLIGIGIALSGVPVYFLGVYLP

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1229 bp
Genome contig ID	gi65515060f_105386026
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- ATAAAATAAATCTTTGGATTTTTGGTATGAACTGC
Flanking genome sequence (107845 - 107894)	----+--------+--------+--------+--------+----* AAGAGGCCTGGAATGTTCTACATAAGGTGTTATGCAAAATTCAGGTAGAT

Gene/Protein Characteristic Table for mKIAA0245

Features of the cloned DNA sequence

Features of the protein sequence