FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0245.ptfa, 352 aa
 vs ./tmplib.26680 library

1768665 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6145+/-0.00334; mu= 17.1671+/- 0.224
 mean_var=64.3291+/-14.946, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1599

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1613  ( 797 res)   mia02020                   ( 797)  144   43   9e-05


>>mKIAA1613  ( 797 res)   mia02020                        (797 aa)
 initn:  70 init1:  70 opt: 144  Z-score: 178.0  bits: 42.6 E(): 9e-05
Smith-Waterman score: 144;  21.762% identity (22.105% ungapped) in 193 aa overlap (63-254:272-462)

             40        50        60        70        80        90  
mKIAA0 FFTFLLSPFSFAWSPTRLCPTGHTEHFQDAFKGSSWNVGDLSLALYSALFSYSGWDTLNF
                                     :   .:. : :. :  . .... :.: .  
mKIAA1 VLNVLNLAVWVFIMIAGLFFINGKYWAEGQFLPHGWS-GVLQGAA-TCFYAFIGFDIIAT
             250       260       270        280        290         

            100       110       120       130       140       150  
mKIAA0 VTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIQDVHKSDAVAVTFADQTFGM
       . :: :::. ..: ::  :. :    :. ...    ..    .   . .   :. . :  
mKIAA1 TGEEAKNPNTSIPYAITASLVICLTAYVSVSMILTLMVPYYAIDTESPLMEMFVAHGFYA
     300       310       320       330       340       350         

            160       170       180       190       200       210  
mKIAA0 FSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPNLLSMIHIERFTPVPALLFNCT
        .... :. . .   .: .:.:   :.... . .: :  .:. .     ::: : . .  
mKIAA1 AKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGF
     360       370       380       390       400       410         

            220       230       240       250        260       270 
mKIAA0 MTLIYLVVKDVFLLINYFSFSYWFFVGLSVVGQLYLRWK-EPDWPRPLKLSLFFPIVFCV
       .. .  .. ..  ::...:..  .   :  :  : ::.. : :                 
mKIAA1 LAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKE
     420       430       440       450       460       470         

             280       290       300       310       320       330 
mKIAA0 CSLFLVAVPLFSDTINSLIGIGIALSGVPVYFLGVYLPESRRPLFIRNVLATVTRVTQKL
                                                                   
mKIAA1 GILADCEKETCSPVSEGEEFSSPATNTCGAKNLPSLGDNEMLIGKSDKSAYNVNHPNYGT
     480       490       500       510       520       530         




352 residues in 1 query   sequences
1768665 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:15:41 2006 done: Mon Mar 27 10:15:41 2006
 Scan time:  0.570 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]